HHsearch alignment for GI: 255764470 and conserved domain: cd04601
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.25 E-value=9e-11 Score=97.73 Aligned_cols=106 Identities=23% Similarity=0.274 Sum_probs=91.3
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCCCHHHHHH-C-CCEEECCCCCHHHHH
Q ss_conf 02899608999899999998579978888767855278888888876202024660168873-2-743523899989999
Q gi|255764470|r 314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEGSMNFKRSI-R-KPLVVHENISVLKLM 391 (523)
Q Consensus 314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~~~~~~~li-r-~~~~Vpe~~~l~~lL 391 (523)
T Consensus 2 rdvvtv~~~~sl~~a~~~m~~~~~~~~pVvd~~-~~l~Giit~~Dl~~~~~--~~~~v~~iM~~~~~~~~~~~~~~~~~~ 78 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD--LDKPVSEVMTPENLLTTVEGTSLEEAL 78 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECC-CEEEEEEEHHHHHHHCC--CCCCCEEEEECCCEEEECCCCCHHHHH
T ss_conf 889897993969999999998499889999489-96987887767765057--678603577057508704768799999
Q ss_pred HHHHHCCCEEEEEECCCCCEEEEEEHHHHHH
Q ss_conf 9885038627775228674256525999999
Q gi|255764470|r 392 ERLRKSSQTFVMVLDEYGVLEGMITPANILE 422 (523)
Q Consensus 392 ~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE 422 (523)
T Consensus 79 ~~m~~~~i~~lpVvd~~~~lvGiIt~~Dilk 109 (110)
T cd04601 79 ELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHHCCCEEEEEECCCCEEEEEEEHHHHCC
T ss_conf 9998668519999988999999999598437