HHsearch alignment for GI: 255764470 and conserved domain: cd04601

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.25  E-value=9e-11  Score=97.73  Aligned_cols=106  Identities=23%  Similarity=0.274  Sum_probs=91.3

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCCCHHHHHH-C-CCEEECCCCCHHHHH
Q ss_conf             02899608999899999998579978888767855278888888876202024660168873-2-743523899989999
Q gi|255764470|r  314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEGSMNFKRSI-R-KPLVVHENISVLKLM  391 (523)
Q Consensus       314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~~~~~~~li-r-~~~~Vpe~~~l~~lL  391 (523)
T Consensus         2 rdvvtv~~~~sl~~a~~~m~~~~~~~~pVvd~~-~~l~Giit~~Dl~~~~~--~~~~v~~iM~~~~~~~~~~~~~~~~~~   78 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD--LDKPVSEVMTPENLLTTVEGTSLEEAL   78 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECC-CEEEEEEEHHHHHHHCC--CCCCCEEEEECCCEEEECCCCCHHHHH
T ss_conf             889897993969999999998499889999489-96987887767765057--678603577057508704768799999


Q ss_pred             HHHHHCCCEEEEEECCCCCEEEEEEHHHHHH
Q ss_conf             9885038627775228674256525999999
Q gi|255764470|r  392 ERLRKSSQTFVMVLDEYGVLEGMITPANILE  422 (523)
Q Consensus       392 ~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE  422 (523)
T Consensus        79 ~~m~~~~i~~lpVvd~~~~lvGiIt~~Dilk  109 (110)
T cd04601          79 ELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             HHHHHCCCEEEEEECCCCEEEEEEEHHHHCC
T ss_conf             9998668519999988999999999598437