HHsearch alignment for GI: 255764470 and conserved domain: cd04602
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.08 E-value=1.9e-09 Score=88.02 Aligned_cols=107 Identities=20% Similarity=0.242 Sum_probs=89.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCC--CCCEEEEEEHHHHHHHHHCCCCCHHHHHHC---CCEEECCCCCHH
Q ss_conf 028996089998999999985799788887678--552788888888762020246601688732---743523899989
Q gi|255764470|r 314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGS--LDSFIGIVSARDLLRDLLEEGSMNFKRSIR---KPLVVHENISVL 388 (523)
Q Consensus 314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~--~D~iiGiv~~kDLl~~~~~~~~~~~~~lir---~~~~Vpe~~~l~ 388 (523)
T Consensus 2 ~dPvtv~p~~tv~ea~~lm~~~~~~~~pVvd~g~~~~klvGIvT~rDi~~~~--~~~~~v~~iMt~~~~~i~~~~~~~l~ 79 (114)
T cd04602 2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT--DSETPLSEVMTPREVLVVAPTGITLE 79 (114)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEHHHHHHCC--CCCCCCCCEEECCCEEEEECCCCCHH
T ss_conf 8899979989999999999971987799996577689699999978952350--76765635165276689947987899
Q ss_pred HHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHH
Q ss_conf 9999885038627775228674256525999999
Q gi|255764470|r 389 KLMERLRKSSQTFVMVLDEYGVLEGMITPANILE 422 (523)
Q Consensus 389 ~lL~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE 422 (523)
T Consensus 80 ea~~~m~~~~i~~LPVVd~~g~LvGiIT~~Di~k 113 (114)
T cd04602 80 EANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred HHHHHHHHCCCCEEEEECCCCEEEEEEECHHHCC
T ss_conf 9999999749667819978996999999244036