HHsearch alignment for GI: 255764470 and conserved domain: cd04603
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.99 E-value=1.3e-08 Score=81.93 Aligned_cols=107 Identities=22% Similarity=0.224 Sum_probs=92.2
Q ss_pred EEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCC-CHHH-HHHCCCEEECCCCCHHHHHH
Q ss_conf 289960899989999999857997888876785527888888887620202466-0168-87327435238999899999
Q gi|255764470|r 315 EIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEGS-MNFK-RSIRKPLVVHENISVLKLME 392 (523)
Q Consensus 315 ~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~~-~~~~-~lir~~~~Vpe~~~l~~lL~ 392 (523)
T Consensus 2 ~pvtv~~~~~L~~a~~~~~e~~~~~i~VVD~~-~k~vG~it~~Dll~~~~~~~~~~~V~d~m~~~v~~i~~~~~v~dalr 80 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLLR 80 (111)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEEHHHHHHHCHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 44686599959999999987699768998899-96889988999864384455324387751567746389976899999
Q ss_pred HHHHCCCEEEEEECCCCCEEEEEEHHHHHH
Q ss_conf 885038627775228674256525999999
Q gi|255764470|r 393 RLRKSSQTFVMVLDEYGVLEGMITPANILE 422 (523)
Q Consensus 393 ~fr~~~~~lAiVvDE~G~~~GIVTleDIlE 422 (523)
T Consensus 81 ~~~~~~~~~l~VVD~~grlvGiI~~rdlLr 110 (111)
T cd04603 81 IFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHCCCCEEEEECCCCCEEEEEEHHHHHC
T ss_conf 987449988999938997999996255123