HHsearch alignment for GI: 255764470 and conserved domain: cd04604
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.22 E-value=3.7e-10 Score=93.25 Aligned_cols=109 Identities=17% Similarity=0.258 Sum_probs=95.7
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCC---CCHHHHHH-CCCEEECCCCCHHH
Q ss_conf 028996089998999999985799788887678552788888888762020246---60168873-27435238999899
Q gi|255764470|r 314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEG---SMNFKRSI-RKPLVVHENISVLK 389 (523)
Q Consensus 314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~---~~~~~~li-r~~~~Vpe~~~l~~ 389 (523)
T Consensus 2 ~~vp~V~~~~si~ea~~~m~~~~~~~v~Vvd~~-~~lvGiiT~~Dl~r~~~~~~~~~~~~v~~iM~~~~~tv~~~~~i~~ 80 (114)
T cd04604 2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred CCCCEECCCCCHHHHHHHHHHCCCCEEEEECCC-CEEEEEEEHHHHHHHHHCCCCCCCCCHHHHHCCCCEEEECCCCHHH
T ss_conf 947788994939999999997699789999799-9399999899999998716664567974743567589938988699
Q ss_pred HHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHH
Q ss_conf 9998850386277752286742565259999998
Q gi|255764470|r 390 LMERLRKSSQTFVMVLDEYGVLEGMITPANILEA 423 (523)
Q Consensus 390 lL~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~ 423 (523)
T Consensus 81 a~~~m~~~~i~~lpVvd~~~~~vGiit~~DllkA 114 (114)
T cd04604 81 ALELMEENKITALPVVDDNGRPVGVLHIHDLLRA 114 (114)
T ss_pred HHHHHHHCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 9999987795799999899989999988995469