HHsearch alignment for GI: 255764470 and conserved domain: cd04608

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.41  E-value=0.0007  Score=47.38  Aligned_cols=84  Identities=19%  Similarity=0.236  Sum_probs=60.8

Q ss_pred             HCCCEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEEECCCH
Q ss_conf             32743523899989999988503862777522867425652599999987066445788863128834985998700119
Q gi|255764470|r  375 IRKPLVVHENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANILEAIAGDFPDEDDQKLDITVGDDGSLTVDGWIDV  454 (523)
Q Consensus       375 ir~~~~Vpe~~~l~~lL~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~IvGei~DE~d~~~~i~~~~d~~~~v~G~~~l  454 (523)
T Consensus         1 l~~~vtv~p~~tv~~a~~~m~~~~i~~lPVvd~~g~~~G~vt~~~ll~~~~~~~~~~~~~V~~v--m~~~~~~v~~~~~l   78 (124)
T cd04608           1 LKAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKA--LYKQFKRVNKNDTL   78 (124)
T ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCHHHH--HCCCCCCCCCCCCH
T ss_conf             9999798998909999999998499856898799968888879999999973899999828997--44656514799855


Q ss_pred             HHHHHH
Q ss_conf             999998
Q gi|255764470|r  455 RYASKL  460 (523)
Q Consensus       455 ~el~~~  460 (523)
T Consensus        79 ~~ls~~   84 (124)
T cd04608          79 GKLSRI   84 (124)
T ss_pred             HHHHCC
T ss_conf             673103