HHsearch alignment for GI: 255764470 and conserved domain: cd04609
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.39 E-value=0.0024 Score=43.50 Aligned_cols=83 Identities=20% Similarity=0.230 Sum_probs=60.8
Q ss_pred CCEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEEECCCHHH
Q ss_conf 74352389998999998850386277752286742565259999998706644578886312883498599870011999
Q gi|255764470|r 377 KPLVVHENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANILEAIAGDFPDEDDQKLDITVGDDGSLTVDGWIDVRY 456 (523)
Q Consensus 377 ~~~~Vpe~~~l~~lL~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~IvGei~DE~d~~~~i~~~~d~~~~v~G~~~l~e 456 (523)
T Consensus 2 dvvtv~p~~tl~~a~~~m~~~~i~~lpVvd~-~~lvGiit~~Di~~~~~~~~~~~~~~v~~i--M~~~~~~v~~~~~l~~ 78 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAKFSLPVREV--MGEPLPTVDPDAPIEE 78 (110)
T ss_pred CEEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHHCCCCCCCCEEEEE--EECCCEEECCCCCHHH
T ss_conf 8069999497999999999819988999989-999999999999999863876468769845--6759459789894999
Q ss_pred HHHHHC
Q ss_conf 999828
Q gi|255764470|r 457 ASKLFG 462 (523)
Q Consensus 457 l~~~l~ 462 (523)
T Consensus 79 ~~~~~~ 84 (110)
T cd04609 79 LSELLD 84 (110)
T ss_pred HHHHHH
T ss_conf 999887