HHsearch alignment for GI: 255764470 and conserved domain: cd04613
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.32 E-value=4.1e-11 Score=100.24 Aligned_cols=109 Identities=22% Similarity=0.333 Sum_probs=93.3
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCC---CCHHHHHH-CCCEEECCCCCHHH
Q ss_conf 028996089998999999985799788887678552788888888762020246---60168873-27435238999899
Q gi|255764470|r 314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEG---SMNFKRSI-RKPLVVHENISVLK 389 (523)
Q Consensus 314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~---~~~~~~li-r~~~~Vpe~~~l~~ 389 (523)
T Consensus 1 rdvvtv~~~~tl~ea~~~m~~~~~~~~pVvd~~-~~lvGiit~~Dl~~~l~~~~~~~~~~v~~im~~~~~~v~~~~~l~~ 79 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED 79 (114)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CEEEEEEEHHHHHHHHHHCCCCCCCEEEHHCCCCCEEEECCCCHHH
T ss_conf 997695890989999999986199789999289-9499999999999999705665572931203629659913678899
Q ss_pred HHHHHHHCCCEEEEEEC-CCCCEEEEEEHHHHHHH
Q ss_conf 99988503862777522-86742565259999998
Q gi|255764470|r 390 LMERLRKSSQTFVMVLD-EYGVLEGMITPANILEA 423 (523)
Q Consensus 390 lL~~fr~~~~~lAiVvD-E~G~~~GIVTleDIlE~ 423 (523)
T Consensus 80 a~~~m~~~~~~~lPVVd~~~g~lvGiit~~Dil~A 114 (114)
T cd04613 80 ALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLSA 114 (114)
T ss_pred HHHHHHHCCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 99999975975999998999989999998995359