HHsearch alignment for GI: 255764470 and conserved domain: cd04613
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.78 E-value=0.00021 Score=51.15 Aligned_cols=84 Identities=20% Similarity=0.185 Sum_probs=53.3
Q ss_pred CCCEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEEECCCHH
Q ss_conf 27435238999899999885038627775228674256525999999870664457888631288349859987001199
Q gi|255764470|r 376 RKPLVVHENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANILEAIAGDFPDEDDQKLDITVGDDGSLTVDGWIDVR 455 (523)
Q Consensus 376 r~~~~Vpe~~~l~~lL~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~IvGei~DE~d~~~~i~~~~d~~~~v~G~~~l~ 455 (523)
T Consensus 1 rdvvtv~~~~tl~ea~~~m~~~~~~~~pVvd~~~~lvGiit~~Dl~~~l~~~~~~~~~~v~~i--m~~~~~~v~~~~~l~ 78 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLYDLVVASDI--MTKPPVVVYPEDSLE 78 (114)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHHCCCCCCCEEEHH--CCCCCEEEECCCCHH
T ss_conf 997695890989999999986199789999289949999999999999970566557293120--362965991367889
Q ss_pred HHHHHH
Q ss_conf 999982
Q gi|255764470|r 456 YASKLF 461 (523)
Q Consensus 456 el~~~l 461 (523)
T Consensus 79 ~a~~~m 84 (114)
T cd04613 79 DALKKF 84 (114)
T ss_pred HHHHHH
T ss_conf 999999