HHsearch alignment for GI: 255764470 and conserved domain: cd04618
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.29 E-value=0.0036 Score=42.18 Aligned_cols=95 Identities=20% Similarity=0.234 Sum_probs=83.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCCCHHHHHHCCCEEECCCCCHHHHHHH
Q ss_conf 02899608999899999998579978888767855278888888876202024660168873274352389998999998
Q gi|255764470|r 314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEGSMNFKRSIRKPLVVHENISVLKLMER 393 (523)
Q Consensus 314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~~~~~~~lir~~~~Vpe~~~l~~lL~~ 393 (523)
T Consensus 1 skliV~D~~l~vk~Af~al~~ngi~~aplWds~~~~fvGmLt~~DfI~il~-------------lv~i~P~~sL~da~~~ 67 (98)
T cd04618 1 SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERSLFDAALL 67 (98)
T ss_pred CEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEHHHHHHHHH-------------HEECCCCCHHHHHHHH
T ss_conf 909999489758999999998692699987288767888864799998876-------------2444876129999999
Q ss_pred HHHCCCEEEEEECCC-CCEEEEEEHHHHH
Q ss_conf 850386277752286-7425652599999
Q gi|255764470|r 394 LRKSSQTFVMVLDEY-GVLEGMITPANIL 421 (523)
Q Consensus 394 fr~~~~~lAiVvDE~-G~~~GIVTleDIl 421 (523)
T Consensus 68 l~~~~ihrlPvid~~~~~~~~ilt~~~il 96 (98)
T cd04618 68 LLKNKIHRLPVIDPSTGTGLYILTSRRIL 96 (98)
T ss_pred HHHCCCCCCCCCCCCCCCEEEEEEEEHEE
T ss_conf 98678750521647999658999630201