HHsearch alignment for GI: 255764470 and conserved domain: cd04629
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.14 E-value=1.1e-09 Score=89.74 Aligned_cols=107 Identities=25% Similarity=0.347 Sum_probs=92.0
Q ss_pred EEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCC-----CCCHHHHHH-CCCEEECCCCCHH
Q ss_conf 2899608999899999998579978888767855278888888876202024-----660168873-2743523899989
Q gi|255764470|r 315 EIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEE-----GSMNFKRSI-RKPLVVHENISVL 388 (523)
Q Consensus 315 ~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~-----~~~~~~~li-r~~~~Vpe~~~l~ 388 (523)
T Consensus 2 ~pvtv~~~~tl~~a~~~m~~~~~~~~pVvd~~-~~lvGiit~~Dll~~~~~~~~~~~~~~~v~~iM~~~~~tv~~~~~~~ 80 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIV 80 (114)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEECCC-CEEEEEEEHHHHHHHHHHHHCCCCCCCEEHHHCCCCCEEEECCCCHH
T ss_conf 89997992999999999997199789999489-92999996789999997754058876591885146887995799999
Q ss_pred HHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHH
Q ss_conf 99998850386277752286742565259999998
Q gi|255764470|r 389 KLMERLRKSSQTFVMVLDEYGVLEGMITPANILEA 423 (523)
Q Consensus 389 ~lL~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~ 423 (523)
T Consensus 81 ~a~~~m~~~~~~~lpVvd~-g~lvGiIt~~DilrA 114 (114)
T cd04629 81 DLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLRA 114 (114)
T ss_pred HHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf 9999988669839999989-999999997996339