HHsearch alignment for GI: 255764470 and conserved domain: cd04638
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=3.6e-10 Score=93.35 Aligned_cols=105 Identities=27% Similarity=0.392 Sum_probs=92.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCCCHHHH-HHCCCEEECCCCCHHHHHH
Q ss_conf 028996089998999999985799788887678552788888888762020246601688-7327435238999899999
Q gi|255764470|r 314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEGSMNFKR-SIRKPLVVHENISVLKLME 392 (523)
Q Consensus 314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~~~~~~~-lir~~~~Vpe~~~l~~lL~ 392 (523)
T Consensus 1 kdvvtv~~~~tv~ea~~lm~~~~i~~lpVvd~~-~~lvGivT~~Dl~~~~~~---~~v~~iMt~~~~tv~~~~~~~~a~~ 76 (106)
T cd04638 1 ENVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPEE---EQLALLMTRDPPTVSPDDDVKEAAK 76 (106)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEECCC-CEEEEEEEHHHHHHCCCC---CHHHHHHCCCCEECCCCCCHHHHHH
T ss_conf 998999994969999999997699989999389-999999897896448750---2446753589736799491999999
Q ss_pred HHHHCCCEEEEEECCCCCEEEEEEHHHHHHH
Q ss_conf 8850386277752286742565259999998
Q gi|255764470|r 393 RLRKSSQTFVMVLDEYGVLEGMITPANILEA 423 (523)
Q Consensus 393 ~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~ 423 (523)
T Consensus 77 ~m~~~~i~~lpVvd~-~~lvGiIt~~DilkA 106 (106)
T cd04638 77 LMVENNIRRVPVVDD-GKLVGIVTVADIVRA 106 (106)
T ss_pred HHHHCCCCEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf 998769759999999-999999997995359