HHsearch alignment for GI: 255764470 and conserved domain: cd04641

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12  E-value=1.8e-09  Score=88.23  Aligned_cols=108  Identities=16%  Similarity=0.204  Sum_probs=90.6

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCC----CCHHHHHH-------CCCEEEC
Q ss_conf             028996089998999999985799788887678552788888888762020246----60168873-------2743523
Q gi|255764470|r  314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEG----SMNFKRSI-------RKPLVVH  382 (523)
Q Consensus       314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~----~~~~~~li-------r~~~~Vp  382 (523)
T Consensus         1 r~Vitv~pd~~l~da~~lm~~~~is~lPVVD~~-g~lvGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~t~~   79 (120)
T cd04641           1 KNIATARPDTPLIDVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS   79 (120)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEEHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCEEEC
T ss_conf             997898998999999999998098669998789-9698997599999887515544344208776421555547856989


Q ss_pred             CCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHH
Q ss_conf             8999899999885038627775228674256525999999
Q gi|255764470|r  383 ENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANILE  422 (523)
Q Consensus       383 e~~~l~~lL~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE  422 (523)
T Consensus        80 ~~~~l~~~~~~m~~~~i~rlpVVD~~~rlvGiIs~~Dilr  119 (120)
T cd04641          80 PDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf             9997999999999849857989989997999998688238