HHsearch alignment for GI: 255764470 and conserved domain: cd04641
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=1.8e-09 Score=88.23 Aligned_cols=108 Identities=16% Similarity=0.204 Sum_probs=90.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCC----CCHHHHHH-------CCCEEEC
Q ss_conf 028996089998999999985799788887678552788888888762020246----60168873-------2743523
Q gi|255764470|r 314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEG----SMNFKRSI-------RKPLVVH 382 (523)
Q Consensus 314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~----~~~~~~li-------r~~~~Vp 382 (523)
T Consensus 1 r~Vitv~pd~~l~da~~lm~~~~is~lPVVD~~-g~lvGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~t~~ 79 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS 79 (120)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEEHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCEEEC
T ss_conf 997898998999999999998098669998789-9698997599999887515544344208776421555547856989
Q ss_pred CCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHH
Q ss_conf 8999899999885038627775228674256525999999
Q gi|255764470|r 383 ENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANILE 422 (523)
Q Consensus 383 e~~~l~~lL~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE 422 (523)
T Consensus 80 ~~~~l~~~~~~m~~~~i~rlpVVD~~~rlvGiIs~~Dilr 119 (120)
T cd04641 80 PDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf 9997999999999849857989989997999998688238