HHsearch alignment for GI: 255764470 and conserved domain: cd04643
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=1.1e-10 Score=97.15 Aligned_cols=107 Identities=21% Similarity=0.338 Sum_probs=90.1
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCC--------CHHHHH-HCCCEEECCC
Q ss_conf 0289960899989999999857997888876785527888888887620202466--------016887-3274352389
Q gi|255764470|r 314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEGS--------MNFKRS-IRKPLVVHEN 384 (523)
Q Consensus 314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~~--------~~~~~l-ir~~~~Vpe~ 384 (523)
T Consensus 1 k~Vvtv~~~~tl~~A~~~m~~~~i~~lPVvd~~-gklvGiit~~Di~~~~~~~~~~~~~~~~~~~V~~iM~~~~~tv~~~ 79 (116)
T cd04643 1 EEVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD 79 (116)
T ss_pred CCEEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CEEEEEEEHHHHHHHHHCCCCCCHHHHCCCCHHHHHCCCCEEEECC
T ss_conf 976999994929999999997499879898699-9499998899999987436532202311668779515698899079
Q ss_pred CCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHH
Q ss_conf 998999998850386277752286742565259999998
Q gi|255764470|r 385 ISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANILEA 423 (523)
Q Consensus 385 ~~l~~lL~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~ 423 (523)
T Consensus 80 ~~i~~~~~~m~~~~--~lpVVD~~~~lvGIITr~DilkA 116 (116)
T cd04643 80 ADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred CCHHHHHHHHHHCC--EEEEEECCCEEEEEEEHHHHHCC
T ss_conf 99999999998789--89999459999999992795579