RPSBLAST alignment for GI: 255764470 and conserved domain: TIGR03717

>gnl|CDD|163429 TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed. Length = 176
 Score = 65.6 bits (161), Expect = 3e-11
 Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 21/195 (10%)

Query: 15  LATLIALELVLGIDNLIFITLLVEKLPLAQRGKALVFGLTFAMVTRIALLASLSYWIVML 74
           L  +IA++LVLG DN + I L    LP  QR KA+ +G   A+V RI LL +++ +++ +
Sbjct: 2   LLQIIAIDLVLGGDNAVVIALAARNLPAHQRKKAIFWGTAGAIVLRI-LLTAVAVYLLAI 60

Query: 75  QQPLFFLKGLSFSGRDIVLILGGFFLLFKGTIELHERLEGDGFDKKHKFFSPVSWQVIVL 134
                FLK           ++GG  LL+ G   L E  E  G D K    S   W  I  
Sbjct: 61  P----FLK-----------LIGGLLLLWIGWKLLLEEEEEQGGDVKG---STTLWAAI-K 101

Query: 135 QIVILDLVFSLDSVVTAIGMVQ-HFSVMAIAVAVSALMMMAVSQPMIRYISRHTTVVILC 193
            IVI D V SLD+V+   G    H  ++   + +S  +++  S  +++ + R   ++ + 
Sbjct: 102 TIVIADAVMSLDNVLAVAGAAHGHLGLLIFGLLLSIPIIVWGSTLILKLMDRFPWIIYIG 161

Query: 194 LGFLLMIGFLLIIEG 208
              L  +   +I+  
Sbjct: 162 AALLGYVAGEMIVTD 176