RPSBLAST alignment for GI: 255764470 and conserved domain: TIGR03717
>gnl|CDD|163429 TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed. Length = 176
Score = 65.6 bits (161), Expect = 3e-11
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 21/195 (10%)
Query: 15 LATLIALELVLGIDNLIFITLLVEKLPLAQRGKALVFGLTFAMVTRIALLASLSYWIVML 74
L +IA++LVLG DN + I L LP QR KA+ +G A+V RI LL +++ +++ +
Sbjct: 2 LLQIIAIDLVLGGDNAVVIALAARNLPAHQRKKAIFWGTAGAIVLRI-LLTAVAVYLLAI 60
Query: 75 QQPLFFLKGLSFSGRDIVLILGGFFLLFKGTIELHERLEGDGFDKKHKFFSPVSWQVIVL 134
FLK ++GG LL+ G L E E G D K S W I
Sbjct: 61 P----FLK-----------LIGGLLLLWIGWKLLLEEEEEQGGDVKG---STTLWAAI-K 101
Query: 135 QIVILDLVFSLDSVVTAIGMVQ-HFSVMAIAVAVSALMMMAVSQPMIRYISRHTTVVILC 193
IVI D V SLD+V+ G H ++ + +S +++ S +++ + R ++ +
Sbjct: 102 TIVIADAVMSLDNVLAVAGAAHGHLGLLIFGLLLSIPIIVWGSTLILKLMDRFPWIIYIG 161
Query: 194 LGFLLMIGFLLIIEG 208
L + +I+
Sbjct: 162 AALLGYVAGEMIVTD 176