RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764470|ref|YP_003064828.2| integral membrane protein TerC
[Candidatus Liberibacter asiaticus str. psy62]
(523 letters)
>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE. Members
of this protein family are exclusive to the
Bacteroidetes phylum (previously
Cytophaga-Flavobacteria-Bacteroides). GldC is a protein
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. GldE was
discovered because of its adjacency to GldD in F.
johnsonii. Overexpression of GldE partially supresses
the effects of a GldB point mutant suggesting that GldB
and GldE interact. Gliding motility appears closely
linked to chitin utilization in the model species
Flavobacterium johnsoniae. Not all Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility and in fact some
do not appear to express the gliding phenotype.
Length = 408
Score = 113 bits (285), Expect = 1e-25
Identities = 68/237 (28%), Positives = 126/237 (53%), Gaps = 5/237 (2%)
Query: 284 KHIISDQEKDMVQSVLTLADRPAKSIMTPRTEIVWLDVNCVDEDLQWKILELGHSRFPVA 343
+ + +E+ ++Q +++ + K +M PR +I LD+ ++ KI+E G+SR PV
Sbjct: 171 EEDTTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVY 230
Query: 344 QGSLDSFIGIVSARDLLRDLLEEGSMNFKRSIRKPLVVHENISVLKLMERLRKSSQTFVM 403
+ ++D+ G++ +DLL L + + +++ +R+P V EN + L+ ++ +
Sbjct: 231 KETIDNITGVLYIKDLL-PHLNKKNFDWQSLLREPYFVPENKKLDDLLRDFQEKKNHLAI 289
Query: 404 VLDEYGVLEGMITPANILEAIAGDFPDE-DDQKLDITVGDDGSLTVDGWIDVRYASKLFG 462
V+DEYG G++T +I+E I GD DE DD+ L + DD + +G ++ K+
Sbjct: 290 VVDEYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKIDDNNYVFEGKTSLKDFYKILK 349
Query: 463 VNLVDEDD---RYSTLAGFILWRLGHLPQEKEIFTEMNLKFEIIRLEGHNIDRVKVS 516
+ D+ TLAGF+L G P++ E T N +F I ++ I +VKV+
Sbjct: 350 LEEDMFDEVKGEAETLAGFLLEISGGFPKKGEKITFENFEFTIEAMDKKRIKQVKVT 406
>gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC;
Provisional.
Length = 292
Score = 99.5 bits (248), Expect = 2e-21
Identities = 65/242 (26%), Positives = 122/242 (50%), Gaps = 5/242 (2%)
Query: 277 LLPTQHEKHIISDQEKDMVQSVLTLADRPAKSIMTPRTEIVWLDVNCVDEDLQWKILELG 336
L+ + +I + +DM++ V+ +AD+ + IM PR++++ L N ++ I+E
Sbjct: 40 LIRDSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESA 99
Query: 337 HSRFPVAQGSLDSFIGIVSARDLLRDLLEEGS-MNFKRSIRKPLVVHENISVLKLMERLR 395
HSRFPV D GI+ A+DLL + + + + +R+ +VV E+ V ++++ R
Sbjct: 100 HSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFR 159
Query: 396 KSSQTFVMVLDEYGVLEGMITPANILEAIAGDFPDE--DDQKLDITVGDDGSLTVDGWID 453
+V+DE+G + G++T +ILE I G+ DE ++ +D + TV
Sbjct: 160 SQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALAS 219
Query: 454 VRYASKLFGVNLVDEDDRYSTLAGFILWRLGHLPQEKEIFTEMNLKFEIIRLEGHNIDRV 513
+ ++ FG + DE+ T+ G ++ GHLP E +F++ + I +V
Sbjct: 220 IEDFNEAFGTHFSDEE--VDTIGGLVMQAFGHLPARGETIDIDGYQFKVAMADSRRIIQV 277
Query: 514 KV 515
V
Sbjct: 278 HV 279
>gnl|CDD|183209 PRK11573, PRK11573, hypothetical protein; Provisional.
Length = 413
Score = 99.1 bits (247), Expect = 3e-21
Identities = 82/281 (29%), Positives = 136/281 (48%), Gaps = 26/281 (9%)
Query: 256 VLRLLGGKPIQPQGLNVKADVLLPTQHEKH-IISDQEKDMVQSVLTLADRPAKSIMTPRT 314
++RL+G K + + L HE IS + +DM+ SVL L IM PR
Sbjct: 138 LMRLMGIKTDIVVSGALSKEELRTIVHESRSQISRRNQDMLLSVLDLEKVTVDDIMVPRN 197
Query: 315 EIVWLDVNCVDEDLQWK--ILELGHS---RFPVAQGSLDSFIGIVSARDLLRDLLEEGSM 369
EIV +D+N D+ WK + +L HS R + + SLD I ++ R+ R + E+
Sbjct: 198 EIVGIDIN--DD---WKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEF 252
Query: 370 NFKRSIRK-------PLVVHENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANILE 422
+ +R P + ++K +K +V+DEYG ++G++T +ILE
Sbjct: 253 TKENMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVG----LVVDEYGDIQGLVTVEDILE 308
Query: 423 AIAGDFPDEDDQKL--DITVGDDGSLTVDGWIDVRYASKLFGVNLVDEDDRYSTLAGFIL 480
I GDF L ++T +DGS+ +DG +VR +K F +L ++D R T+ G IL
Sbjct: 309 EIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDAR--TVNGVIL 366
Query: 481 WRLGHLPQEKEIFTEMNLKFEIIRLEGHNIDRVKVSGLQNL 521
L +P +I+ ++ + I +VKV+ ++ L
Sbjct: 367 EALEEIPVAGTRVRIGEYDIDILDVQDNMIKQVKVTPVKPL 407
>gnl|CDD|163429 TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family.
Rfam model RF00080 describes a structured RNA element
called the yybP-ykoY leader, or SraF, which may precede
one or several genes in a genome. Members of this highly
hydrophobic protein family commonly are preceded by a
yybP-ykoY leader, which may serve as a riboswitch. From
the larger group of TerC homologs (pfam03741), this
subfamily contains protein YjbE from Bacillus subtilis.
A transport function is proposed.
Length = 176
Score = 65.6 bits (161), Expect = 3e-11
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 21/195 (10%)
Query: 15 LATLIALELVLGIDNLIFITLLVEKLPLAQRGKALVFGLTFAMVTRIALLASLSYWIVML 74
L +IA++LVLG DN + I L LP QR KA+ +G A+V RI LL +++ +++ +
Sbjct: 2 LLQIIAIDLVLGGDNAVVIALAARNLPAHQRKKAIFWGTAGAIVLRI-LLTAVAVYLLAI 60
Query: 75 QQPLFFLKGLSFSGRDIVLILGGFFLLFKGTIELHERLEGDGFDKKHKFFSPVSWQVIVL 134
FLK ++GG LL+ G L E E G D K S W I
Sbjct: 61 P----FLK-----------LIGGLLLLWIGWKLLLEEEEEQGGDVKG---STTLWAAI-K 101
Query: 135 QIVILDLVFSLDSVVTAIGMVQ-HFSVMAIAVAVSALMMMAVSQPMIRYISRHTTVVILC 193
IVI D V SLD+V+ G H ++ + +S +++ S +++ + R ++ +
Sbjct: 102 TIVIADAVMSLDNVLAVAGAAHGHLGLLIFGLLLSIPIIVWGSTLILKLMDRFPWIIYIG 161
Query: 194 LGFLLMIGFLLIIEG 208
L + +I+
Sbjct: 162 AALLGYVAGEMIVTD 176
>gnl|CDD|163428 TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family.
Rfam model RF00080 describes a structured RNA element
called the yybP-ykoY leader, or SraF, which may precede
one or several genes in a genome. Members of this highly
hydrophobic protein family often are preceded by a
yybP-ykoY leader, which may serve as a riboswitch. From
the larger group of TerC homologs (pfam03741), this
subfamily contains proteins YceF and YkoY from Bacillus
subtilis. A transport function is proposed.
Length = 215
Score = 61.5 bits (150), Expect = 5e-10
Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 24/218 (11%)
Query: 19 IALELVLGIDNLIFITLLVEKLPLAQRGKALVFGLTFAMVTRIALLASLSYWIVMLQQPL 78
+ LE +L DN + + ++V+ LP QR KAL +GL A V R L S+ I
Sbjct: 1 VILEGLLSADNALVLAVMVKHLPEKQRKKALFYGLIGAYVFRFIALFLASFLI-----KF 55
Query: 79 FFLKGLSFSGRDIVLILGGFFLLFKGTIELHERLEGDGFDKKHKFFSPVSWQVIVLQIVI 138
+++K +G +LL+ ++ +G ++ K + + VL++ +
Sbjct: 56 WWIK-----------AIGALYLLYLAIKHFRKKKKGKEDEEAEKKKAHSGFWRTVLKVEL 104
Query: 139 LDLVFSLDSVVTAIGMVQHFSVMAIAVAVSALMMMAVSQPMIRYISRHTT------VVIL 192
+D+ FS+DS++ A+ + F V+ + + L+M + ++ + R ++I
Sbjct: 105 MDIAFSVDSILAAVALSGQFWVVFLGGIIGILIMRFAATIFVKLLERFPELETAAFLLIG 164
Query: 193 CLGFLLMIGFLLI--IEGLHFDIPKGYLYASIGFSGII 228
+G L++ L I LH + P L+ I + ++
Sbjct: 165 WIGVKLLLETLAHPSIPILHIEFPHSALWKLIFWGVLV 202
>gnl|CDD|184871 PRK14869, PRK14869, putative manganese-dependent inorganic
pyrophosphatase; Provisional.
Length = 546
Score = 31.3 bits (72), Expect = 0.56
Identities = 14/66 (21%), Positives = 32/66 (48%)
Query: 375 IRKPLVVHENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANILEAIAGDFPDEDDQ 434
I KP+ V + S+ + + +++ + V+DE G L G+++ +++ A E
Sbjct: 75 IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILS 134
Query: 435 KLDITV 440
K ++
Sbjct: 135 KSPTSL 140
Score = 27.9 bits (63), Expect = 6.4
Identities = 21/87 (24%), Positives = 28/87 (32%), Gaps = 11/87 (12%)
Query: 350 FIGIVSARDLLRDLLEEGSMNFKRSIRKPLVVHENI------SVLKLMERLRKSSQTFVM 403
+G+VS DL R ++ L ENI VL E + V+
Sbjct: 111 LLGLVSLSDLARAYMDILDPEILSKSPTSL---ENIIRTLDGEVLVGAEEDKVEEGKVVV 167
Query: 404 VLDEYGVLEGMITPANILEAIAGDFPD 430
L I +I I GD D
Sbjct: 168 AAMAPESLLERIEEGDI--VIVGDRED 192
>gnl|CDD|162293 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase.
This model describes a rather tightly conserved cluster
of IMP dehydrogenase sequences, many of which are
characterized. The model excludes two related families
of proteins proposed also to be IMP dehydrogenases, but
without characterized members. These are related
families are the subject of separate models.
Length = 450
Score = 31.5 bits (72), Expect = 0.58
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 351 IGIVSARDLLRDLLEEGSMNFKRSIRKPLVVHENISVLKLMERLRKSSQTFVMVLDEYGV 410
+GI++ RD+ + ++ + + + V E I + + ++ L + + V+D+ G
Sbjct: 127 VGIITKRDIRFVKDKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGE 186
Query: 411 LEGMITPANILEAIAGDFPD 430
L G+IT +I++ FP
Sbjct: 187 LVGLITMKDIVKRR--KFPH 204
>gnl|CDD|180134 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase;
Reviewed.
Length = 486
Score = 30.9 bits (71), Expect = 0.86
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 29/106 (27%)
Query: 338 SRFPV--AQGSLDSFIGIVSARDLLRDLLEEGSMNFKRSI-----RKPLV-VHENIS--- 386
S PV G L +GI++ RD+ + + + ++ LV V E +
Sbjct: 119 SGVPVVDENGKL---VGIITNRDV------RFETDLSQPVSEVMTKERLVTVPEGTTLEE 169
Query: 387 VLKLME--RLRKSSQTFVMVLDEYGVLEGMITPANILEAIAGDFPD 430
L+L+ R+ K + V+D+ G L+G+IT +I +A FP+
Sbjct: 170 ALELLHEHRIEK-----LPVVDDNGRLKGLITVKDIEKAEE--FPN 208
>gnl|CDD|162029 TIGR00764, lon_rel, lon-related putative ATP-dependent protease.
Members of this family from Pyrococcus horikoshii and
Pyrococcus abyssi each contain a predicted intein.
Length = 608
Score = 30.2 bits (68), Expect = 1.3
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 196 FLLMIGFLLIIEGLHFDIPKGYLYASIGFSGIIEFFNQVARRNREQLMSPSRL 248
L MIGF+++ E ++P YL A++ + +I R +M P L
Sbjct: 112 LLFMIGFIVLSEYFLKNLPPNYLLAAVIAAALILLIFGFFIP-RTSIMVPKLL 163
>gnl|CDD|106000 PRK12871, ubiA, prenyltransferase; Reviewed.
Length = 297
Score = 29.4 bits (66), Expect = 2.3
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 196 FLLMIGFLLIIEGLHFDIPKG---YLYASIGFSGIIEFFNQVARRNR 239
F L I + L +P Y++ + +S IE F QV +RN+
Sbjct: 100 FALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQVKKRNQ 146
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 28.6 bits (64), Expect = 4.1
Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 145 LDSVVTAIGMVQHFSVMAIAVAVSALMMMAVSQPMIRYISRHTTVVIL-CLGFLLMIGFL 203
L+++ +G S+ IA+ +S L + + ++ RH + +L + ++I L
Sbjct: 17 LNAIAAFMGTRTWDSIEKIALTLSVLAVAVM------WVQRHNVMDLLGWVAVFVLISLL 70
Query: 204 LII 206
+ +
Sbjct: 71 VNV 73
>gnl|CDD|184348 PRK13823, PRK13823, conjugal transfer protein TrbD; Provisional.
Length = 94
Score = 28.4 bits (64), Expect = 4.2
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 141 LVFS-LDSVVTAIGMVQHFSVMAIAVAVSALMMMAVSQPMIRYIS-RH 186
L+F G+ F A+ AL +MA + P +R++ RH
Sbjct: 36 LIFVAQTWRAALFGIALWF------GALFALRLMAKADPKMRHVYLRH 77
>gnl|CDD|151032 pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7
(DPP-7) is the best characterized member of this family.
It is a serine peptidase that is located on the cell
surface and is predicted to have two N-terminal
transmembrane domains.
Length = 696
Score = 28.3 bits (64), Expect = 5.0
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 11/45 (24%)
Query: 417 PANILEAI-AGDFPDEDDQK----------LDITVGDDGSLTVDG 450
P +L+AI A DF D+ DIT G+ GS ++G
Sbjct: 596 PEKLLDAIEAKDFGRYADELGSVPVNFLSTNDITGGNSGSPVLNG 640
>gnl|CDD|162220 TIGR01137, cysta_beta, cystathionine beta-synthase. Members of
this family closely resemble cysteine synthase but
contain an additional C-terminal CBS domain. The
function of any bacterial member included in this family
is proposed but not proven.
Length = 454
Score = 28.2 bits (63), Expect = 5.1
Identities = 18/83 (21%), Positives = 34/83 (40%)
Query: 352 GIVSARDLLRDLLEEGSMNFKRSIRKPLVVHENISVLKLMERLRKSSQTFVMVLDEYGVL 411
G + L + + + + P+ VH +V +E LR+ + V+ E G +
Sbjct: 319 GFLDDEVLTVFDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKV 378
Query: 412 EGMITPANILEAIAGDFPDEDDQ 434
G +T +L A+ + DD
Sbjct: 379 LGSVTLRELLSALFAGKANPDDA 401
>gnl|CDD|132153 TIGR03109, exosortase_1, exosortase 1. The predicted
protein-sorting transpeptidase that we call exosortase
(see TIGR02602) has distinct subclasses that associated
with different types of exopolysaccharide production
loci. We designate this, the most common type so far,
exosortase 1. We propose the gene symbol xrtA, analogous
to srtA for the most common type of sortase in
Gram-positive bacteria.
Length = 267
Score = 28.0 bits (63), Expect = 5.7
Identities = 31/203 (15%), Positives = 58/203 (28%), Gaps = 48/203 (23%)
Query: 91 IVLILGGFFLLFKGTIELHERLEGDGFDKKHKFF-------------------SPVSWQV 131
++L+L L + T + H F +P +
Sbjct: 10 LLLVLAAIILAYLPTWLSMVEIWARSDTYSHGFLIPPISLYLVWRKREELAKLAPQPSPL 69
Query: 132 IVLQIVILDLVFSLDSVVTAIGMVQHFSVMAIAVAVS----------------ALMMMAV 175
+L ++ L + L ++ +V S++A+ V A ++ AV
Sbjct: 70 GLLLLIAAGLAW-LLGEAASVSLVAQLSLVALLVFSVIALLGPRVARALAFPLAFLLFAV 128
Query: 176 SQPMIRYISRHTTVVILCLGFLLMIGFLLIIEGLHFDIPKG------------YLYASIG 223
+ L G + EG+ IP G YL AS+
Sbjct: 129 PVGDFLIPPLQDITAFFTVALLSATGIPVYREGVFIHIPSGTFEVAEACSGLRYLIASLA 188
Query: 224 FSGIIEFFNQVARRNREQLMSPS 246
+ + N + + R S
Sbjct: 189 IGALYAYLNFRSIKRRLLFFLVS 211
>gnl|CDD|152382 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to 196
amino acids in length.
Length = 149
Score = 28.0 bits (63), Expect = 6.1
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 174 AVSQPMIRYISRHTTVVILCLGFLLMIGFLLIIEGLHFDIPKGY-LYASIGFSGI 227
VS MIR I+ + + LG + + L++ D+P L S+GF G+
Sbjct: 52 VVSNRMIRRIA-FFSGIPTALGMAVFVVSYLLVSRGIIDVPPWVTLLVSLGFFGL 105
>gnl|CDD|183544 PRK12469, PRK12469, RNA polymerase factor sigma-54; Provisional.
Length = 481
Score = 27.9 bits (62), Expect = 6.9
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 382 HENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANILEAIAGDF-PDEDD------- 433
H+ + + L ER R+ ++T + LD+ G L + + EA + E +
Sbjct: 130 HDALRLYFLTERDREIARTIIDALDDDGYLRQ--DLSELAEAADPELGLSEQELEVALRL 187
Query: 434 -QKLD 437
Q LD
Sbjct: 188 VQSLD 192
>gnl|CDD|152698 pfam12263, DUF3611, Protein of unknown function (DUF3611). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 180 and
205 amino acids in length. There are two completely
conserved residues (W and G) that may be functionally
important.
Length = 183
Score = 27.7 bits (62), Expect = 7.0
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 12 WIGLATLIALELVLGIDNLIFITLLVEKLPLAQRGKALVFGLTFAMVTRIALLASL--SY 69
WIG + L +V + L+F L + R L GL ++ IAL S+ ++
Sbjct: 19 WIGFWIQLVLGVVSAL-ILLFAVLFSGLVRSPDRNLGLGIGLFLTIIGLIALGFSIFFAF 77
Query: 70 WIVMLQQPL 78
L + L
Sbjct: 78 RYTRLGRRL 86
>gnl|CDD|179398 PRK02259, PRK02259, aspartoacylase; Provisional.
Length = 288
Score = 27.5 bits (62), Expect = 7.9
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 25/92 (27%)
Query: 332 ILELGHSRFPVAQGSLDSFI-----GIVSARDLLRDLLEEGSMNFKRSIRKPLVVHENIS 386
++E+G PV QG LD+ I ++ + + D LE+ + + LVV+ ++
Sbjct: 160 VIEVG----PVPQGVLDAEIFEQTELLIES---ILDYLEKYNQGKLPLPNEQLVVYRHLG 212
Query: 387 VLKLMERLRKSSQTFVMVLDEYGVLEGMITPA 418
+ DE G + MI P
Sbjct: 213 SIDYPR-------------DENGQIAAMIHPQ 231
>gnl|CDD|163430 TIGR03718, R_switched_Alx, integral membrane protein, TerC family.
Rfam model RF00080 describes a structured RNA element
called the yybP-ykoY leader, or SraF, which may precede
one or several genes in a genome. Members of this highly
hydrophobic protein family often are preceded by a
yybP-ykoY leader, which may serve as a riboswitch. From
the larger group of TerC homologs (pfam03741), this
subfamily contains TerC itself from Alcaligenes sp.
plasmid IncHI2 pMER610 and from Proteus mirabilis. It
also contains the alkaline-inducible E. coli protein
Alx, which unlike the two TerC examples is preceded by a
yybP-ykoY leader.
Length = 302
Score = 27.5 bits (62), Expect = 8.5
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 24/146 (16%)
Query: 21 LELVLGIDNLIFITLLVEKL--PLAQRGKALVFGLTFAMVTR---IALLASL---SYWIV 72
+E L +DNL L+ P + + L +G+ A+V R IAL A+L +W++
Sbjct: 71 IEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAIFIALGAALIEQFHWVL 130
Query: 73 MLQQPLF--FL-----KGLSFSGRDIVLILGGFFLLFKGTIELHERLEGDGF---DKKHK 122
+F FL K L + L + + + ++ GD F + +
Sbjct: 131 ----YIFGAFLLYTGIKMLFEGDEEDDPENNPLVRLLRRVLPVTDKYHGDRFFVRENGKR 186
Query: 123 FFSPVSWQVIVLQIVILDLVFSLDSV 148
+ +P+ ++++ + DL+F++DS+
Sbjct: 187 YATPLF--LVLVLVETTDLIFAVDSI 210
>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins.
Length = 206
Score = 27.2 bits (61), Expect = 9.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 205 IIEGLHFDIPKGYLYASIGFSG 226
I++ L+ I KG +YA IG SG
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESG 34
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.327 0.143 0.419
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,881,616
Number of extensions: 616124
Number of successful extensions: 1777
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1763
Number of HSP's successfully gapped: 65
Length of query: 523
Length of database: 5,994,473
Length adjustment: 98
Effective length of query: 425
Effective length of database: 3,876,889
Effective search space: 1647677825
Effective search space used: 1647677825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.5 bits)