HHsearch alignment for GI: 255764471 and conserved domain: CHL00071
>CHL00071 tufA elongation factor Tu.
Probab=99.56 E-value=1.1e-13 Score=111.24 Aligned_cols=152 Identities=20% Similarity=0.176 Sum_probs=111.8
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHCC---------------CCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCC
Q ss_conf 444303886403564256788765201---------------21100024566542023114203406999817110444
Q gi|255764471|r 200 ISKPLRIAVVGRPNVGKSTLINRLLGY---------------NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 (470)
Q Consensus 200 ~~~~i~~~~~G~pN~GKStl~N~l~~~---------------~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk 264 (470)
T Consensus 9 ~k~~vni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~~et~~~~~~~iD~PG---- 84 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAANGGAKGKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPG---- 84 (409)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCEEEECEEEEECCCEEEEEEECCC----
T ss_conf 9986999999545883999999986453004513343155323797687369448802489962875999986796----
Q ss_pred CCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCC-CEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 44300011100012100120120599845532122021223200000035766-55894422335415556665420133
Q gi|255764471|r 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV-VLALNKWDMVSDKLNLLQDLRTKAIK 343 (470)
Q Consensus 265 ~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~-iiv~NK~Dli~~~~~~~~~~~~~~~~ 343 (470)
T Consensus 85 ------H~~fv-~nmi~Gas~aD~alLVV~A~~G~~~QTkEHl~l~~~lgV~~~IVavnKmD~v~~~-~~~e~i~~~i~~ 156 (409)
T CHL00071 85 ------HADYV-KNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDE-ELLELVELEVRE 156 (409)
T ss_pred ------HHHHH-HHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHH-HHHHHHHHHHHH
T ss_conf ------78999-9987523015812899986878850049999999973999365555567985489-999999999999
Q ss_pred CCCC----CCCCCCCCCCCCCCCC
Q ss_conf 3200----4883111234533348
Q gi|255764471|r 344 NLPQ----IGDIYINTISGRTGEG 363 (470)
Q Consensus 344 ~~~~----~~~~~i~~iSA~~g~g 363 (470)
T Consensus 157 ~l~~~g~~~~~i~~vp~sa~~~~~ 180 (409)
T CHL00071 157 LLDKYDFPGDEIPIVAGSALLALE 180 (409)
T ss_pred HHHHCCCCCCCCEEEECCHHHHHH
T ss_conf 999739984556089652133234