HHsearch alignment for GI: 255764471 and conserved domain: PRK04004
>PRK04004 translation initiation factor IF-2; Validated.
Probab=99.86 E-value=1.1e-21 Score=165.07 Aligned_cols=150 Identities=21% Similarity=0.365 Sum_probs=111.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCC-CCEEEEEEEEEEECCE------------------EEEEEECCCCCC
Q ss_conf 508999718988788899998588501025898-5302238999998998------------------999996588420
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHP-GITRDRLYGQAIINGV------------------IFNIVDTAGIAD 62 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~-g~Trd~~~~~~~~~~~------------------~~~liDT~G~~~ 62 (470)
T Consensus 5 ~PIvtimGHVDhGKTsLLD~iR~t~V--~~~EaGGITQhIGA~~v~~~~~~~~~~~~~~~~~~~~~ipgllfiDTPGH-- 80 (592)
T PRK04004 5 QPIVVVLGHVDHGKTTLLDKIRGTAV--AAKEAGGITQHIGATEVPIDVIEKIAGPLVKRLPLKLKIPGLLFIDTPGH-- 80 (592)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCCEECEEEECCCCHHHHCCCCCCCCCCCCCCCCCEEECCCCH--
T ss_conf 98899978737776368999862877--35557762323065984123101103443344332345677557659965--
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHH----------------
Q ss_conf 7636899999999999998779899997598877623445553321023322220565223012----------------
Q gi|255764471|r 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA---------------- 126 (470)
Q Consensus 63 ~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~---------------- 126 (470)
T Consensus 81 ---eaFt~-mR~---RGa~vtDiaILVVa~~dGv~pQT~EaI~~~k~~~vP~IVAiNKiDr~~gw~~~~~~~~~~~~~~q 153 (592)
T PRK04004 81 ---EAFSN-LRK---RGGALADIAILVVDINEGFQPQTIESLNILKSRKTPFVVAANKIDRIPGWKSVEGAPFLESFKKQ 153 (592)
T ss_pred ---HHHHH-HHH---HCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHC
T ss_conf ---99999-997---36745788999997788867627999999997599889998622356667767674112322317
Q ss_pred --------H----HHHHHHHHHCCC--------------CCEEEHHHCCCCCHHHHHHHHHH
Q ss_conf --------1----001245531222--------------20100111022201479999998
Q gi|255764471|r 127 --------Q----RNFYEIYSLDFK--------------EIVEISAEHDLGTSELHSVIFKI 162 (470)
Q Consensus 127 --------~----~~~~e~~~lg~~--------------~~i~iSA~~g~Gi~~L~~~i~~~ 162 (470)
T Consensus 154 ~~~v~~~l~~~~~~vi~~l~e~G~~~e~~~~~~d~g~~v~~VpvSA~tGeGi~dLL~~i~~L 215 (592)
T PRK04004 154 SERVQAELEEKLYELIGELYELGFSADRFDRVSDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 215 (592)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 38899999888888889998728763221454345881489978205689989999999999