HHsearch alignment for GI: 255764471 and conserved domain: TIGR00436
>TIGR00436 era GTP-binding protein Era; InterPro: IPR005662 Era is an essential G-protein in Escherichia coli identified originally as a homologue protein to Ras (E. coli Ras-like protein). It binds to GTP/GDP and contains a low intrinsic GTPase activity. Its function remains elusive, although it may be associated with cell division, energy metabolism, and cell-cycle check point. The protein has recently been shown to specifically bind to 16S rRNA and the 30S ribosomal subunit . Involvement of Era in protein synthesis is suggested by the fact that Era depletion results in the translation defect both in vitro and in vivo. A Type 2 KH domain is found near the C-terminus. ; GO: 0003723 RNA binding, 0005525 GTP binding, 0005622 intracellular.
Probab=99.50 E-value=4.4e-14 Score=113.83 Aligned_cols=174 Identities=25% Similarity=0.242 Sum_probs=133.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE-EEEEECHHCCCC-CCCCCHHHHHHCCCCCEE
Q ss_conf 388640356425678876520121100024566542023114203406-999817110444-443000111000121001
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP-IEIFDTAGMRKP-SRITESLEQKTVKKSMQS 282 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~-~~liDTaGirkk-~~~~~~~E~~s~~~t~~~ 282 (470)
T Consensus 2 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~pg~~~~~~~---~~~~~~~~~~~~~ 78 (278)
T TIGR00436 2 FVAILGRPNVGKSTLLNKLLGQKISITSPKPQTTRNRISGILTTGASQNIIFIDTPGFHEPEKH---KLGELLNKEARSA 78 (278)
T ss_pred CEEECCCCCCCHHHHHHHHHCCCHHCCCCCCHHHHHHHHEEEECCCCCCEEEEECCCCCCHHHH---HHHHHHHHHHHHH
T ss_conf 1121157765336677766324101002310123433200122366551578625876512456---7788888888753
Q ss_pred EECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20120599845532122021223200000035766558944223354155566654201333200488311123453334
Q gi|255764471|r 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 (470)
Q Consensus 283 i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~ 362 (470)
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~ 156 (278)
T TIGR00436 79 LGGVDLLLFVVDSDEWNGDGDEFLLEKLQNLKRPVLLTLNKLDNKNFPDKLLPLLD-KYAGLEDFK-PWPIVPISALKGD 156 (278)
T ss_pred HCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHCCC-CCCEEEHHHHHHC
T ss_conf 12322688986334455640468898765202101001223331010356777776-665542046-7520110112100
Q ss_pred CHHHHHHHHHHHHHHHHCCCC
Q ss_conf 858999999999998414689
Q gi|255764471|r 363 GLDDLMVSVLEINKLWKTRIT 383 (470)
Q Consensus 363 gi~~l~~~i~~~~~~~~~ri~ 383 (470)
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~ 177 (278)
T TIGR00436 157 NTEELKAFLEAKLPEGPFYYP 177 (278)
T ss_pred HHHHHHHHHHHHCCCCCCCCC
T ss_conf 057788887753033432265