HHsearch alignment for GI: 255764471 and conserved domain: TIGR00436

>TIGR00436 era GTP-binding protein Era; InterPro: IPR005662 Era is an essential G-protein in Escherichia coli identified originally as a homologue protein to Ras (E. coli Ras-like protein). It binds to GTP/GDP and contains a low intrinsic GTPase activity. Its function remains elusive, although it may be associated with cell division, energy metabolism, and cell-cycle check point. The protein has recently been shown to specifically bind to 16S rRNA and the 30S ribosomal subunit . Involvement of Era in protein synthesis is suggested by the fact that Era depletion results in the translation defect both in vitro and in vivo. A Type 2 KH domain is found near the C-terminus. ; GO: 0003723 RNA binding, 0005525 GTP binding, 0005622 intracellular.
Probab=99.50  E-value=4.4e-14  Score=113.83  Aligned_cols=174  Identities=25%  Similarity=0.242  Sum_probs=133.7

Q ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE-EEEEECHHCCCC-CCCCCHHHHHHCCCCCEE
Q ss_conf             388640356425678876520121100024566542023114203406-999817110444-443000111000121001
Q gi|255764471|r  205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP-IEIFDTAGMRKP-SRITESLEQKTVKKSMQS  282 (470)
Q Consensus       205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~-~~liDTaGirkk-~~~~~~~E~~s~~~t~~~  282 (470)
T Consensus         2 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~pg~~~~~~~---~~~~~~~~~~~~~   78 (278)
T TIGR00436         2 FVAILGRPNVGKSTLLNKLLGQKISITSPKPQTTRNRISGILTTGASQNIIFIDTPGFHEPEKH---KLGELLNKEARSA   78 (278)
T ss_pred             CEEECCCCCCCHHHHHHHHHCCCHHCCCCCCHHHHHHHHEEEECCCCCCEEEEECCCCCCHHHH---HHHHHHHHHHHHH
T ss_conf             1121157765336677766324101002310123433200122366551578625876512456---7788888888753


Q ss_pred             EECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             20120599845532122021223200000035766558944223354155566654201333200488311123453334
Q gi|255764471|r  283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE  362 (470)
Q Consensus       283 i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~  362 (470)
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~  156 (278)
T TIGR00436        79 LGGVDLLLFVVDSDEWNGDGDEFLLEKLQNLKRPVLLTLNKLDNKNFPDKLLPLLD-KYAGLEDFK-PWPIVPISALKGD  156 (278)
T ss_pred             HCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHCCC-CCCEEEHHHHHHC
T ss_conf             12322688986334455640468898765202101001223331010356777776-665542046-7520110112100


Q ss_pred             CHHHHHHHHHHHHHHHHCCCC
Q ss_conf             858999999999998414689
Q gi|255764471|r  363 GLDDLMVSVLEINKLWKTRIT  383 (470)
Q Consensus       363 gi~~l~~~i~~~~~~~~~ri~  383 (470)
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~  177 (278)
T TIGR00436       157 NTEELKAFLEAKLPEGPFYYP  177 (278)
T ss_pred             HHHHHHHHHHHHCCCCCCCCC
T ss_conf             057788887753033432265