HHsearch alignment for GI: 255764471 and conserved domain: TIGR03598
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=100.00 E-value=4.8e-34 Score=248.35 Aligned_cols=148 Identities=24% Similarity=0.308 Sum_probs=114.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCC-----HHHHHHHHHHH
Q ss_conf 5089997189887888999985885-01025898530223899999899899999658842076-----36899999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKK-MAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK-----NCSIAKQMNDQ 75 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~-~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~-----~~~~~~~i~~~ 75 (470)
T Consensus 18 ~p~IaivGrpNvGKSTL~N~L~g~k~~a~vs~~pGtTr~i~~~~~---~~~~~lvDtpGyG~~~~~~~~~~~~~-~~~~~ 93 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---NDGFRLVDLPGYGYAKVSKEEKEKWQ-KLIEE 93 (179)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEE---CCCEEEEECCCHHHCCCCHHHHHHHH-HHHHH
T ss_conf 978999869998889999998689855897089973660232010---47369997776021127888899999-99999
Q ss_pred HHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHH---HHH-HHH----CCCCCEEEHHH
Q ss_conf 9999987798999975988776234455533210233222205652230121001---245-531----22220100111
Q gi|255764471|r 76 TELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNF---YEI-YSL----DFKEIVEISAE 147 (470)
Q Consensus 76 ~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~---~e~-~~l----g~~~~i~iSA~ 147 (470)
T Consensus 94 ~~~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~~kp~iivlNK~Dll~~~~~~~~~~~i~~~l~~~~~~~~v~~ISA~ 173 (179)
T TIGR03598 94 YLRGRENLKGVVLLMDIRHPLKELDLEMLEWLDERGIPVLIVLTKADKLKKSERNKQLKKIKKALKKDADDPSVQLFSSL 173 (179)
T ss_pred HHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 99998864302898743779989999999999975998899997813069899999999999997336688948999799
Q ss_pred CCCCCH
Q ss_conf 022201
Q gi|255764471|r 148 HDLGTS 153 (470)
Q Consensus 148 ~g~Gi~ 153 (470)
T Consensus 174 ~g~GID 179 (179)
T TIGR03598 174 KKTGIE 179 (179)
T ss_pred CCCCCC
T ss_conf 983879