HHsearch alignment for GI: 255764471 and conserved domain: cd00877
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.60 E-value=2.7e-15 Score=121.98 Aligned_cols=149 Identities=17% Similarity=0.187 Sum_probs=93.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHH--HCCCCEEEECCE--EEEEEECHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 038864035642567887652012110002456654--202311420340--6999817110444443000111000121
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR--DSVSISWNWKNH--PIEIFDTAGMRKPSRITESLEQKTVKKS 279 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTr--D~i~~~~~~~~~--~~~liDTaGirkk~~~~~~~E~~s~~~t 279 (470)
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~~~f-~--~~~~~Tig~~~~~~~~~~~~~~v~l~iwDtaG----------qe~~~~l~- 66 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEF-E--KKYVATLGVEVHPLDFHTNRGKIRFNVWDTAG----------QEKFGGLR- 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC-C--CCCCCCCCEEEEEEEEEECCEEEEEEEEECCC----------CHHHHHHH-
T ss_conf 9899999999888999999983999-9--98687325567999999999799999997578----------71566687-
Q ss_pred CEEEECCEEEEEECCCCCCCH--HHHHHHHHHHH--CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 001201205998455321220--21223200000--03576655894422335415556665420133320048831112
Q gi|255764471|r 280 MQSVRTCETTIVLLDATIPFE--KQDLRIVDSVF--NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~~~~--~qd~~i~~~i~--~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
T Consensus 67 ~~y~~~a~~~ilvyDvt~~~Sf~~v~~w~-~~i~~~~~~~piilVgNK~Dl~~~~~~--~~~~~-----~~~~~~~~~~E 138 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWH-RDLVRVCGNIPIVLCGNKVDIKDRKVK--AKQIT-----FHRKKNLQYYE 138 (166)
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHH-HHHHHHCCCCCEEEEEECCCCCCCCCC--HHHHH-----HHHHCCCEEEE
T ss_conf 88740065799843789888999999999-999986899989999986217503667--99999-----99978998999
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q ss_conf 3453334858999999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~~ 374 (470)
T Consensus 139 tSAk~~~nV~e~F~~la~~ 157 (166)
T cd00877 139 ISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCCCCCHHHHHHHHHHH
T ss_conf 8458990989999999999