HHsearch alignment for GI: 255764471 and conserved domain: cd00877

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.60  E-value=2.7e-15  Score=121.98  Aligned_cols=149  Identities=17%  Similarity=0.187  Sum_probs=93.1

Q ss_pred             EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHH--HCCCCEEEECCE--EEEEEECHHCCCCCCCCCHHHHHHCCCC
Q ss_conf             038864035642567887652012110002456654--202311420340--6999817110444443000111000121
Q gi|255764471|r  204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR--DSVSISWNWKNH--PIEIFDTAGMRKPSRITESLEQKTVKKS  279 (470)
Q Consensus       204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTr--D~i~~~~~~~~~--~~~liDTaGirkk~~~~~~~E~~s~~~t  279 (470)
T Consensus         1 ~KivlvGd~~VGKTsli~r~~~~~f-~--~~~~~Tig~~~~~~~~~~~~~~v~l~iwDtaG----------qe~~~~l~-   66 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEF-E--KKYVATLGVEVHPLDFHTNRGKIRFNVWDTAG----------QEKFGGLR-   66 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCCC-C--CCCCCCCCEEEEEEEEEECCEEEEEEEEECCC----------CHHHHHHH-
T ss_conf             9899999999888999999983999-9--98687325567999999999799999997578----------71566687-


Q ss_pred             CEEEECCEEEEEECCCCCCCH--HHHHHHHHHHH--CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             001201205998455321220--21223200000--03576655894422335415556665420133320048831112
Q gi|255764471|r  280 MQSVRTCETTIVLLDATIPFE--KQDLRIVDSVF--NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT  355 (470)
Q Consensus       280 ~~~i~~advvi~viDa~~~~~--~qd~~i~~~i~--~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~  355 (470)
T Consensus        67 ~~y~~~a~~~ilvyDvt~~~Sf~~v~~w~-~~i~~~~~~~piilVgNK~Dl~~~~~~--~~~~~-----~~~~~~~~~~E  138 (166)
T cd00877          67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWH-RDLVRVCGNIPIVLCGNKVDIKDRKVK--AKQIT-----FHRKKNLQYYE  138 (166)
T ss_pred             HHHHCCCCEEEEECCCCCHHHHHHHHHHH-HHHHHHCCCCCEEEEEECCCCCCCCCC--HHHHH-----HHHHCCCEEEE
T ss_conf             88740065799843789888999999999-999986899989999986217503667--99999-----99978998999


Q ss_pred             CCCCCCCCHHHHHHHHHHH
Q ss_conf             3453334858999999999
Q gi|255764471|r  356 ISGRTGEGLDDLMVSVLEI  374 (470)
Q Consensus       356 iSA~~g~gi~~l~~~i~~~  374 (470)
T Consensus       139 tSAk~~~nV~e~F~~la~~  157 (166)
T cd00877         139 ISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCCCCCHHHHHHHHHHH
T ss_conf             8458990989999999999