HHsearch alignment for GI: 255764471 and conserved domain: cd01867
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.64 E-value=7.9e-16 Score=125.61 Aligned_cols=155 Identities=17% Similarity=0.135 Sum_probs=94.4
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 430388640356425678876520121100024566542023114203406--999817110444443000111000121
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKS 279 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t 279 (470)
T Consensus 2 y~~KivlvGd~~vGKTsli~r~~~~~f~~-~~~~Tig~~~~~k~v~~~~~~i~l~iwDt~G----------~e~~~~~~- 69 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNP-SFISTIGIDFKIRTIELDGKKIKLQIWDTAG----------QERFRTIT- 69 (167)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCCC-CCCCCCCEEEEEEEEEECCEEEEEEEEECCC----------CCCHHHHH-
T ss_conf 68999999999978899999996099999-8689864688999999999999999998999----------70011667-
Q ss_pred CEEEECCEEEEEECCCCCCCHHH--HHHHHHHHHC---CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 00120120599845532122021--2232000000---357665589442233541555666542013332004883111
Q gi|255764471|r 280 MQSVRTCETTIVLLDATIPFEKQ--DLRIVDSVFN---TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~~~~~q--d~~i~~~i~~---~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~ 354 (470)
T Consensus 70 ~~y~~~a~~~ilvfdit~~~Sf~~~~~w~-~~i~~~~~~~~~~ilVgNK~Dl~~~r~v~~~e~~~~-a~~----~~~~~~ 143 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWM-RNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEAL-ADE----YGIKFL 143 (167)
T ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHH-HHHHHHCCCCCCEEEECCCCCCHHCCCCCHHHHHHH-HHH----HCCEEE
T ss_conf 99856505889955689879999999999-999986699970576421245023077999999999-998----099699
Q ss_pred CCCCCCCCCHHHHHHHHHHH
Q ss_conf 23453334858999999999
Q gi|255764471|r 355 TISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 355 ~iSA~~g~gi~~l~~~i~~~ 374 (470)
T Consensus 144 e~SAktg~nI~e~F~~l~~~ 163 (167)
T cd01867 144 ETSAKANINVEEAFFTLAKD 163 (167)
T ss_pred EECCCCCCCHHHHHHHHHHH
T ss_conf 98225790789999999999