HHsearch alignment for GI: 255764471 and conserved domain: cd01868
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.63 E-value=6.9e-16 Score=126.01 Aligned_cols=153 Identities=19% Similarity=0.243 Sum_probs=91.0
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHH--HCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCC
Q ss_conf 43038864035642567887652012110002456654--2023114203406--9998171104444430001110001
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR--DSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVK 277 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTr--D~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~ 277 (470)
T Consensus 2 y~~Kiv~iGd~~VGKTsli~r~~~~~-f~~~~~~--Tig~~~~~k~i~~~~~~~~l~iwDtaG----------~e~~~~~ 68 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNE-FNLDSKS--TIGVEFATRSIQIDGKTIKAQIWDTAG----------QERYRAI 68 (165)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCC-CCCCCCC--CCCEEEEEEEEEECCEEEEEEEEECCC----------CHHHHHH
T ss_conf 35899999999978999999997298-9998898--744787899999999999999998999----------7212678
Q ss_pred CCCEEEECCEEEEEECCCCCCCHHHHH-HHHHHHHC---CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 210012012059984553212202122-32000000---35766558944223354155566654201333200488311
Q gi|255764471|r 278 KSMQSVRTCETTIVLLDATIPFEKQDL-RIVDSVFN---TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 (470)
Q Consensus 278 ~t~~~i~~advvi~viDa~~~~~~qd~-~i~~~i~~---~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i 353 (470)
T Consensus 69 ~-~~~~~~a~~~ilvydit~~~Sf~~i~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~Vs~~e~~~~-----a~~~~~~~ 142 (165)
T cd01868 69 T-SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAF-----AEKNGLSF 142 (165)
T ss_pred H-HHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCHHHHHHH-----HHHCCCEE
T ss_conf 9-98733205148986269889999999999999985557735987023478688578889999999-----99859979
Q ss_pred CCCCCCCCCCHHHHHHHHHH
Q ss_conf 12345333485899999999
Q gi|255764471|r 354 NTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 354 ~~iSA~~g~gi~~l~~~i~~ 373 (470)
T Consensus 143 ~E~SAk~g~nV~e~F~~l~~ 162 (165)
T cd01868 143 IETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred EEECCCCCCCHHHHHHHHHH
T ss_conf 99678889298999999999