HHsearch alignment for GI: 255764471 and conserved domain: cd01875

>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.63  E-value=2.2e-15  Score=122.66  Aligned_cols=159  Identities=18%  Similarity=0.228  Sum_probs=100.2

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCC
Q ss_conf             430388640356425678876520121100024566542023114203406--999817110444443000111000121
Q gi|255764471|r  202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKS  279 (470)
Q Consensus       202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t  279 (470)
T Consensus         2 ~~~KivlvGd~~VGKTsli~r~~~~~F--~~~y~pti~~~~~~~~~i~~~~v~l~iwDtaG----------~e~~~~~~~   69 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAF--PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAG----------QEEYDRLRT   69 (191)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEECCEEEEEEEEECCC----------CCCHHHHHH
T ss_conf             518999999999899999999972999--98646621000467899999999999985888----------700356778


Q ss_pred             CEEEECCEEEEEECCCCCCCHHHHH--HHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHHH--------CCCCCC-
Q ss_conf             0012012059984553212202122--32000000--3576655894422335415556665420--------133320-
Q gi|255764471|r  280 MQSVRTCETTIVLLDATIPFEKQDL--RIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRTK--------AIKNLP-  346 (470)
Q Consensus       280 ~~~i~~advvi~viDa~~~~~~qd~--~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~~~~~--------~~~~~~-  346 (470)
T Consensus        70 ~-~~~~a~~~ilvfdvt~~~Sf~~v~~~w~~ei~~~~~~~piiLvGnK~DL~~~~~~~-~~~~e~~~~~vs~eeg~~~a~  147 (191)
T cd01875          70 L-SYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTL-KKLKEQGQAPITPQQGGALAK  147 (191)
T ss_pred             H-HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH-HHHHHHHCCCCCHHHHHHHHH
T ss_conf             7-74478689999857977889999999999999709699789998880102345778-887764137556999999999


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             0488311123453334858999999999
Q gi|255764471|r  347 QIGDIYINTISGRTGEGLDDLMVSVLEI  374 (470)
Q Consensus       347 ~~~~~~i~~iSA~~g~gi~~l~~~i~~~  374 (470)
T Consensus       148 ~~~~~~y~EtSAkt~~nV~e~F~~l~k~  175 (191)
T cd01875         148 QIHAVKYLECSALNQDGVKEVFAEAVRA  175 (191)
T ss_pred             HHCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             8099889990689896989999999999