HHsearch alignment for GI: 255764471 and conserved domain: cd01878
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.97 E-value=2.2e-31 Score=230.41 Aligned_cols=156 Identities=27% Similarity=0.377 Sum_probs=118.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEE-CCEEEEEEECHH-CCCCCCCCCHHHHHHCCCCCE
Q ss_conf 038864035642567887652012110002456654202311420-340699981711-044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW-KNHPIEIFDTAG-MRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~-~~~~~~liDTaG-irkk~~~~~~~E~~s~~~t~~ 281 (470)
T Consensus 42 p~VaivG~PNvGKSTLlN~L~g~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~i~~~p--~~lie~~--~~tle 116 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAF--RSTLE 116 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCC--HHHHHHH--HHHHH
T ss_conf 879998899998999999994899-634156776457636689956997799983686446783--7899999--99999
Q ss_pred EEECCEEEEEECCCCCCCHHHH----HHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 1201205998455321220212----232000000357665589442233541555666542013332004883111234
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQD----LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd----~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iS 357 (470)
T Consensus 117 ~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NKiDl~~~~~~~-~~~~---------~~~~~~i~IS 186 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-ERLE---------AGRPDAVFIS 186 (204)
T ss_pred HHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHH-HHHH---------HCCCCEEEEE
T ss_conf 99739899999979985366779999999998065557607888670479957589-9997---------0899879998
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 53334858999999999
Q gi|255764471|r 358 GRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 358 A~~g~gi~~l~~~i~~~ 374 (470)
T Consensus 187 A~~g~Gid~L~~~I~e~ 203 (204)
T cd01878 187 AKTGEGLDELLEAIEEL 203 (204)
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 86894999999999955