HHsearch alignment for GI: 255764471 and conserved domain: cd01881
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.97 E-value=9.1e-31 Score=226.28 Aligned_cols=153 Identities=30% Similarity=0.347 Sum_probs=98.4
Q ss_pred EECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC-CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCE
Q ss_conf 971898878889999858850102589853022389999989-9899999658842076368999999999999987798
Q gi|255764471|r 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHL 85 (470)
Q Consensus 7 ivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~ 85 (470)
T Consensus 1 ivG~PNvGKSTL~N~Lt~~~~-~v~~~pgTTr~~~~g~~~~~~~~~i~~~DtpGi~~~~~~--~~~~~~~~l~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASE--GRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCCHHHHHHHHHCCCC-EEECCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHH--HHHHHHHHHHHHHCCCE
T ss_conf 969998889999999968996-030789967612467999479966999957875457337--87899999987410889
Q ss_pred EEEEECCCCCCCHHHHHHH-------HHH----------HCCCCCCCCCHHHHCCCHHHHHHH----HHHHHCCCCCEEE
Q ss_conf 9999759887762344555-------332----------102332222056522301210012----4553122220100
Q gi|255764471|r 86 ILFLIDSKAGITPYDHAIT-------SFL----------RKKNIPIIIVSNKMDTRIAQRNFY----EIYSLDFKEIVEI 144 (470)
Q Consensus 86 il~vvD~~~g~~~~D~~i~-------~~l----------r~~~~~~ilv~NK~D~~~~~~~~~----e~~~lg~~~~i~i 144 (470)
T Consensus 78 il~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~kp~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ii~i 157 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECEECCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99999898765545445899999999999971156655543269719999686034700315999999974689958999
Q ss_pred HHHCCCCCHHHHHHHHHH
Q ss_conf 111022201479999998
Q gi|255764471|r 145 SAEHDLGTSELHSVIFKI 162 (470)
Q Consensus 145 SA~~g~Gi~~L~~~i~~~ 162 (470)
T Consensus 158 SA~~~~gi~~L~~~i~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ECCCCCCHHHHHHHHHHH
T ss_conf 777887999999999965