HHsearch alignment for GI: 255764471 and conserved domain: cd01883

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.68  E-value=9.9e-16  Score=124.93  Aligned_cols=141  Identities=21%  Similarity=0.259  Sum_probs=101.9

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC------------------------EEEECCC------CCCEEEEEEEEEEECCEEEEE
Q ss_conf             9997189887888999985885------------------------0102589------853022389999989989999
Q gi|255764471|r    5 IAIVGAPNVGKSTLFNRLVKKK------------------------MAVVGNH------PGITRDRLYGQAIINGVIFNI   54 (470)
Q Consensus         5 iaivG~pNvGKStL~N~l~~~~------------------------~aiv~~~------~g~Trd~~~~~~~~~~~~~~l   54 (470)
T Consensus         2 i~iiGHvD~GKSTL~g~lL~~~g~i~~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~~~~f~~~~~~~~i   81 (219)
T cd01883           2 LVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTI   81 (219)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEE
T ss_conf             89996689989999999999859976889999999998549987505566138987985892588589999849936999


Q ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCC-------CCHHHHHHHHHHHCCCCC-CCCCHHHHCCCH-
Q ss_conf             96588420763689999999999999877989999759887-------762344555332102332-222056522301-
Q gi|255764471|r   55 VDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAG-------ITPYDHAITSFLRKKNIP-IIIVSNKMDTRI-  125 (470)
Q Consensus        55 iDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g-------~~~~D~~i~~~lr~~~~~-~ilv~NK~D~~~-  125 (470)
T Consensus        82 iDtPGH~-----df~~~mi----~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~~~lGik~iIVavNKMD~v~~  152 (219)
T cd01883          82 LDAPGHR-----DFVPNMI----TGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTV  152 (219)
T ss_pred             EECCCCH-----HHHHHHH----HHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf             8789726-----6788999----877531668999985767510366777659999999998499748999987536886


Q ss_pred             -HHHH-----HHH----HHHHCCC----CCEEEHHHCCCCCHH
Q ss_conf             -2100-----124----5531222----201001110222014
Q gi|255764471|r  126 -AQRN-----FYE----IYSLDFK----EIVEISAEHDLGTSE  154 (470)
Q Consensus       126 -~~~~-----~~e----~~~lg~~----~~i~iSA~~g~Gi~~  154 (470)
T Consensus       153 ~y~~~rf~~i~~~~~~~l~~~g~~~~~~~~IPiSa~~GdNi~~  195 (219)
T cd01883         153 NWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE  195 (219)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
T ss_conf             5259999999999999999829995661599933676630466