HHsearch alignment for GI: 255764471 and conserved domain: cd01884
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.85 E-value=1.7e-21 Score=163.71 Aligned_cols=152 Identities=20% Similarity=0.190 Sum_probs=111.4
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCC-----------CCC----CHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCC
Q ss_conf 3038864035642567887652012-----------110----0024566542023114203406999817110444443
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYN-----------RLL----TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~-----------r~i----vs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~ 267 (470)
T Consensus 2 ~~Ni~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~~~~~~~~~~~~~~~~IDtPG------- 74 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPG------- 74 (195)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCCCEEEEEECCCEEEEECCCCC-------
T ss_conf 3799999605886989999999988663444411200100546665058861441899960881699626896-------
Q ss_pred CCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCC-CCEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 0001110001210012012059984553212202122320000003576-655894422335415556665420133320
Q gi|255764471|r 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA-VVLALNKWDMVSDKLNLLQDLRTKAIKNLP 346 (470)
Q Consensus 268 ~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~-~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~ 346 (470)
T Consensus 75 ---H~dF~~-~~i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~~~~-~~~~v~~ei~~~l~ 149 (195)
T cd01884 75 ---HADYIK-NMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEE-LLELVEMEVRELLS 149 (195)
T ss_pred ---HHHHHH-HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHH-HHHHHHHHHHHHHH
T ss_conf ---077888-9986351136268998527787478999999999809996279996877898789-99999999999998
Q ss_pred C----CCCCCCCCCCCCCCCCHHH
Q ss_conf 0----4883111234533348589
Q gi|255764471|r 347 Q----IGDIYINTISGRTGEGLDD 366 (470)
Q Consensus 347 ~----~~~~~i~~iSA~~g~gi~~ 366 (470)
T Consensus 150 ~~g~~~~~~p~ip~Sa~~g~~~~~ 173 (195)
T cd01884 150 KYGFDGDNTPIVRGSALKALEGDD 173 (195)
T ss_pred HCCCCCCCCEEEEEEHHHHHCCCC
T ss_conf 429995568299977387535788