HHsearch alignment for GI: 255764471 and conserved domain: cd01887

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.96  E-value=6.5e-29  Score=213.78  Aligned_cols=150  Identities=23%  Similarity=0.355  Sum_probs=86.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEE---EECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             0899971898878889999858850102589853022389999---9899899999658842076368999999999999
Q gi|255764471|r    3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQA---IINGVIFNIVDTAGIADGKNCSIAKQMNDQTELA   79 (470)
Q Consensus         3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~---~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~a   79 (470)
T Consensus         1 P~VaivG~~n~GKSTL~n~L~~~~~~-~~~~~g~T~~i~~~~~~~~~~~~~~i~~iDTPGh~-----~f~~-~---~~~~   70 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE-----AFTN-M---RARG   70 (168)
T ss_pred             CEEEEEECCCCCHHHHHHHHHCCCCC-EEECCCCEEEECEEEEEEEECCCCEEEEEECCCCH-----HHHH-H---HHHH
T ss_conf             98999948998598999998586750-45169816871539999882588718999899816-----7799-9---9999


Q ss_pred             HHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHH--HHHHHHHHH---------CCCCCEEEHHHC
Q ss_conf             987798999975988776234455533210233222205652230121--001245531---------222201001110
Q gi|255764471|r   80 INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQ--RNFYEIYSL---------DFKEIVEISAEH  148 (470)
Q Consensus        80 i~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~--~~~~e~~~l---------g~~~~i~iSA~~  148 (470)
T Consensus        71 ~~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p~ivviNKiD~~~~~~~~v~~~l~~~~~~~~~~~~~~~~iIpvSA~t  150 (168)
T cd01887          71 ASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKT  150 (168)
T ss_pred             HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCC
T ss_conf             86268899998646675458999999998769978999989308987989999999997545245528987599998999


Q ss_pred             CCCCHHHHHHHHHH
Q ss_conf             22201479999998
Q gi|255764471|r  149 DLGTSELHSVIFKI  162 (470)
Q Consensus       149 g~Gi~~L~~~i~~~  162 (470)
T Consensus       151 G~gi~~L~~~i~~~  164 (168)
T cd01887         151 GEGIDDLLEAILLL  164 (168)
T ss_pred             CCCHHHHHHHHHHH
T ss_conf             98999999999999