HHsearch alignment for GI: 255764471 and conserved domain: cd01887
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.96 E-value=6.5e-29 Score=213.78 Aligned_cols=150 Identities=23% Similarity=0.355 Sum_probs=86.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEE---EECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589853022389999---9899899999658842076368999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQA---IINGVIFNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~---~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
T Consensus 1 P~VaivG~~n~GKSTL~n~L~~~~~~-~~~~~g~T~~i~~~~~~~~~~~~~~i~~iDTPGh~-----~f~~-~---~~~~ 70 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE-----AFTN-M---RARG 70 (168)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCC-EEECCCCEEEECEEEEEEEECCCCEEEEEECCCCH-----HHHH-H---HHHH
T ss_conf 98999948998598999998586750-45169816871539999882588718999899816-----7799-9---9999
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHH--HHHHHHHHH---------CCCCCEEEHHHC
Q ss_conf 987798999975988776234455533210233222205652230121--001245531---------222201001110
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQ--RNFYEIYSL---------DFKEIVEISAEH 148 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~--~~~~e~~~l---------g~~~~i~iSA~~ 148 (470)
T Consensus 71 ~~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p~ivviNKiD~~~~~~~~v~~~l~~~~~~~~~~~~~~~~iIpvSA~t 150 (168)
T cd01887 71 ASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKT 150 (168)
T ss_pred HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCC
T ss_conf 86268899998646675458999999998769978999989308987989999999997545245528987599998999
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 22201479999998
Q gi|255764471|r 149 DLGTSELHSVIFKI 162 (470)
Q Consensus 149 g~Gi~~L~~~i~~~ 162 (470)
T Consensus 151 G~gi~~L~~~i~~~ 164 (168)
T cd01887 151 GEGIDDLLEAILLL 164 (168)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 98999999999999