HHsearch alignment for GI: 255764471 and conserved domain: cd01887

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.96  E-value=2.1e-29  Score=217.10  Aligned_cols=161  Identities=24%  Similarity=0.294  Sum_probs=122.2

Q ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEE---EECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf             388640356425678876520121100024566542023114---20340699981711044444300011100012100
Q gi|255764471|r  205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW---NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ  281 (470)
Q Consensus       205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~---~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~  281 (470)
T Consensus         2 ~VaivG~~n~GKSTL~n~L~~~~~~-~~~~~g~T~~i~~~~~~~~~~~~~~i~~iDTPG----------h~~f~~~~~~-   69 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPG----------HEAFTNMRAR-   69 (168)
T ss_pred             EEEEEECCCCCHHHHHHHHHCCCCC-EEECCCCEEEECEEEEEEEECCCCEEEEEECCC----------CHHHHHHHHH-
T ss_conf             8999948998598999998586750-451698168715399998825887189998998----------1677999999-


Q ss_pred             EEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHH-HHHHHHH-CCCCCCCCCCCCCCCCCCC
Q ss_conf             1201205998455321220212232000000357665589442233541555-6665420-1333200488311123453
Q gi|255764471|r  282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNL-LQDLRTK-AIKNLPQIGDIYINTISGR  359 (470)
Q Consensus       282 ~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~-~~~~~~~-~~~~~~~~~~~~i~~iSA~  359 (470)
T Consensus        70 ~~~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p~ivviNKiD~~~~~~~~v~~~l~~~~~~~~~~~~~~~~iIpvSA~  149 (168)
T cd01887          70 GASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAK  149 (168)
T ss_pred             HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEEEEECC
T ss_conf             98626889999864667545899999999876997899998930898798999999999754524552898759999899


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q ss_conf             334858999999999998
Q gi|255764471|r  360 TGEGLDDLMVSVLEINKL  377 (470)
Q Consensus       360 ~g~gi~~l~~~i~~~~~~  377 (470)
T Consensus       150 tG~gi~~L~~~i~~~a~~  167 (168)
T cd01887         150 TGEGIDDLLEAILLLAEK  167 (168)
T ss_pred             CCCCHHHHHHHHHHHHHC
T ss_conf             998999999999999715