HHsearch alignment for GI: 255764471 and conserved domain: cd01891

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.88  E-value=9.6e-23  Score=172.19  Aligned_cols=154  Identities=20%  Similarity=0.234  Sum_probs=111.5

Q ss_pred             EEEEEEECCCCCHHHHHHHHHCCCCCCC-----H----------HHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCC
Q ss_conf             0388640356425678876520121100-----0----------245665420231142034069998171104444430
Q gi|255764471|r  204 LRIAVVGRPNVGKSTLINRLLGYNRLLT-----G----------SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRIT  268 (470)
Q Consensus       204 i~~~~~G~pN~GKStl~N~l~~~~r~iv-----s----------~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~  268 (470)
T Consensus         3 RNv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPG--------   74 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPG--------   74 (194)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCC--------
T ss_conf             789999068987999999999974876304652168614758888728763345899998998899998998--------


Q ss_pred             CHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHH-HHHHHHHHCCCCCC-
Q ss_conf             0011100012100120120599845532122021223200000035766558944223354155-56665420133320-
Q gi|255764471|r  269 ESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAIKNLP-  346 (470)
Q Consensus       269 ~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~-~~~~~~~~~~~~~~-  346 (470)
T Consensus        75 --H~dF~~-~~~~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~iv~iNK~D~~~a~~~~v~~ei~~~~~-~~~~  150 (194)
T cd01891          75 --HADFGG-EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFI-ELGA  150 (194)
T ss_pred             --CHHHHH-HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH-HCCC
T ss_conf             --477777-898776434467898653789758999999999872997499885645898889999999999998-6399


Q ss_pred             --CCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             --04883111234533348589999
Q gi|255764471|r  347 --QIGDIYINTISGRTGEGLDDLMV  369 (470)
Q Consensus       347 --~~~~~~i~~iSA~~g~gi~~l~~  369 (470)
T Consensus       151 ~~~~~~~pii~~SA~~G~~~d~~~~  175 (194)
T cd01891         151 TEEQLDFPVLYASAKNGWASLNLED  175 (194)
T ss_pred             CCCCCCCCEEEEECCCCCCCCCCCC
T ss_conf             9333588578725655335778865