HHsearch alignment for GI: 255764471 and conserved domain: cd01892
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.59 E-value=4.3e-14 Score=113.91 Aligned_cols=151 Identities=15% Similarity=0.219 Sum_probs=102.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989989--9999658842076368999999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
T Consensus 4 vfk~~VlG~~~VGKTsLi~rf~~~~f~~~~y~~Ti~~~~~~k~v~v~g~~~~L~i~Dt~g~e~~------~~l---~~~~ 74 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVA------ILL---NDAE 74 (169)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHH------HHH---HHHH
T ss_conf 8999999999988999999996499986665675466189999998999999999855653235------566---5887
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHHHHC----CCCCCCCCHHHHCCCHHHHH----HHHHH-HHCCCCCEEEHHHCCC
Q ss_conf 987798999975988776234455533210----23322220565223012100----12455-3122220100111022
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSFLRK----KNIPIIIVSNKMDTRIAQRN----FYEIY-SLDFKEIVEISAEHDL 150 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~lr~----~~~~~ilv~NK~D~~~~~~~----~~e~~-~lg~~~~i~iSA~~g~ 150 (470)
T Consensus 75 ~~~ad~~ilVyDit~~~-SF-~~i~~~~~~~~~~~~iP~vlVgNK~DL~~~rqV~~~e~~~~a~~~~~~~~~e~SAktg~ 152 (169)
T cd01892 75 LAACDVACLVYDSSDPK-SF-SYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGD 152 (169)
T ss_pred HCCCCEEEEEEECCCHH-HH-HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 54698899999799878-99-99999999700568981899988655420375467769999998399966699832798
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 2014799999986
Q gi|255764471|r 151 GTSELHSVIFKIF 163 (470)
Q Consensus 151 Gi~~L~~~i~~~~ 163 (470)
T Consensus 153 nv~~~F~~la~~a 165 (169)
T cd01892 153 SSNELFTKLATAA 165 (169)
T ss_pred CHHHHHHHHHHHH
T ss_conf 9899999999997