HHsearch alignment for GI: 255764471 and conserved domain: cd04101
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.66 E-value=3.7e-16 Score=127.84 Aligned_cols=156 Identities=21% Similarity=0.200 Sum_probs=96.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHH-HHHHHHCCCCEEEE-CCE--EEEEEECHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 0388640356425678876520121100024-56654202311420-340--6999817110444443000111000121
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ-SGITRDSVSISWNW-KNH--PIEIFDTAGMRKPSRITESLEQKTVKKS 279 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~-~GtTrD~i~~~~~~-~~~--~~~liDTaGirkk~~~~~~~E~~s~~~t 279 (470)
T Consensus 1 iKivllGd~gVGKTsli~r~~~~~~~f~~~y~~Tig~~~~~k~~~~~~~~~i~l~iwDtaG~----------e~~~~l-~ 69 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ----------ELYSDM-V 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCC----------CCHHHH-H
T ss_conf 99999995995889999999978886688888864578899999978997999999979998----------400678-9
Q ss_pred CEEEECCEEEEEECCCCCCCHHHHH-HHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 0012012059984553212202122-32000000--35766558944223354155566654201333200488311123
Q gi|255764471|r 280 MQSVRTCETTIVLLDATIPFEKQDL-RIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~~~~~qd~-~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
T Consensus 70 ~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~r~V~~~e~~~-----~a~~~~~~~~E~ 144 (164)
T cd04101 70 SNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQA-----FAQANQLKFFKT 144 (164)
T ss_pred HHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHH-----HHHHCCCEEEEE
T ss_conf 999764268999970774668999999999999766898689998722445245569999999-----999889989998
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 4533348589999999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~~~ 375 (470)
T Consensus 145 SAk~g~nV~e~F~~lar~~ 163 (164)
T cd04101 145 SALRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 6688909899999999986