HHsearch alignment for GI: 255764471 and conserved domain: cd04102

>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.33  E-value=3.2e-12  Score=101.30  Aligned_cols=157  Identities=17%  Similarity=0.175  Sum_probs=91.4

Q ss_pred             EEEEEEECCCCCHHHHHHHHHCCCCC-CCHHHHHHHHHCCCCEEEEC-----C--EEEEEEECHHCCCCCCCCCHHHHHH
Q ss_conf             03886403564256788765201211-00024566542023114203-----4--0699981711044444300011100
Q gi|255764471|r  204 LRIAVVGRPNVGKSTLINRLLGYNRL-LTGSQSGITRDSVSISWNWK-----N--HPIEIFDTAGMRKPSRITESLEQKT  275 (470)
Q Consensus       204 i~~~~~G~pN~GKStl~N~l~~~~r~-ivs~~~GtTrD~i~~~~~~~-----~--~~~~liDTaGirkk~~~~~~~E~~s  275 (470)
T Consensus         1 vKIlllGDsgVGKTSL~~~~~~~~f~~~~~~TiG~~v~~--k~~~~~~~~~~~k~~~l~lWDtaG----------qery~   68 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDV--KHHTYKEGTPEEKTFFVELWDVGG----------SESVK   68 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEE--EEEEECCCCCCCCEEEEEEEECCC----------CHHHH
T ss_conf             989999999989999999998398888888850367899--999933787678389999998998----------77577


Q ss_pred             CCCCCEEEECCEEEEEECCCCCC--CHHHHHHHHHHH---------------------HCCCCCCCEEEECCCCCCCHHH
Q ss_conf             01210012012059984553212--202122320000---------------------0035766558944223354155
Q gi|255764471|r  276 VKKSMQSVRTCETTIVLLDATIP--FEKQDLRIVDSV---------------------FNTGHAVVLALNKWDMVSDKLN  332 (470)
Q Consensus       276 ~~~t~~~i~~advvi~viDa~~~--~~~qd~~i~~~i---------------------~~~~k~~iiv~NK~Dli~~~~~  332 (470)
T Consensus        69 sl~~-~yYr~a~gvILVyDvTnr~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vPilvVGtK~D~~~~r~~  147 (202)
T cd04102          69 STRA-VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES  147 (202)
T ss_pred             HHHH-HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCCC
T ss_conf             6789-975889899999989498999869999999975367666545566655533346789758999760652434355


Q ss_pred             HHHH-------HHHH--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             5666-------5420--133320048831112345333485899999999
Q gi|255764471|r  333 LLQD-------LRTK--AIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE  373 (470)
Q Consensus       333 ~~~~-------~~~~--~~~~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~  373 (470)
T Consensus       148 ~~~~~~~~~~~ia~q~~~eei~~~c~~~~~~~~~~~~~~kl~~ff~~vie  197 (202)
T cd04102         148 SGNLVLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIE  197 (202)
T ss_pred             CCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             54235553025777516678887456844003467551689999999988