HHsearch alignment for GI: 255764471 and conserved domain: cd04102
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.33 E-value=3.2e-12 Score=101.30 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=91.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCC-CCHHHHHHHHHCCCCEEEEC-----C--EEEEEEECHHCCCCCCCCCHHHHHH
Q ss_conf 03886403564256788765201211-00024566542023114203-----4--0699981711044444300011100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRL-LTGSQSGITRDSVSISWNWK-----N--HPIEIFDTAGMRKPSRITESLEQKT 275 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~-ivs~~~GtTrD~i~~~~~~~-----~--~~~~liDTaGirkk~~~~~~~E~~s 275 (470)
T Consensus 1 vKIlllGDsgVGKTSL~~~~~~~~f~~~~~~TiG~~v~~--k~~~~~~~~~~~k~~~l~lWDtaG----------qery~ 68 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDV--KHHTYKEGTPEEKTFFVELWDVGG----------SESVK 68 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEE--EEEEECCCCCCCCEEEEEEEECCC----------CHHHH
T ss_conf 989999999989999999998398888888850367899--999933787678389999998998----------77577
Q ss_pred CCCCCEEEECCEEEEEECCCCCC--CHHHHHHHHHHH---------------------HCCCCCCCEEEECCCCCCCHHH
Q ss_conf 01210012012059984553212--202122320000---------------------0035766558944223354155
Q gi|255764471|r 276 VKKSMQSVRTCETTIVLLDATIP--FEKQDLRIVDSV---------------------FNTGHAVVLALNKWDMVSDKLN 332 (470)
Q Consensus 276 ~~~t~~~i~~advvi~viDa~~~--~~~qd~~i~~~i---------------------~~~~k~~iiv~NK~Dli~~~~~ 332 (470)
T Consensus 69 sl~~-~yYr~a~gvILVyDvTnr~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vPilvVGtK~D~~~~r~~ 147 (202)
T cd04102 69 STRA-VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES 147 (202)
T ss_pred HHHH-HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCCC
T ss_conf 6789-975889899999989498999869999999975367666545566655533346789758999760652434355
Q ss_pred HHHH-------HHHH--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 5666-------5420--133320048831112345333485899999999
Q gi|255764471|r 333 LLQD-------LRTK--AIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 333 ~~~~-------~~~~--~~~~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~ 373 (470)
T Consensus 148 ~~~~~~~~~~~ia~q~~~eei~~~c~~~~~~~~~~~~~~kl~~ff~~vie 197 (202)
T cd04102 148 SGNLVLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIE 197 (202)
T ss_pred CCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 54235553025777516678887456844003467551689999999988