>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

Probab=99.64 E-value=6.1e-16 Score=126.39 Aligned_cols=155 Identities=21% Similarity=0.218 Sum_probs=94.1 Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH-HHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE Q ss_conf 3886403564256788765201211000245665-42023114203406--99981711044444300011100012100 Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT-RDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470) Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtT-rD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470) T Consensus 2 KivlvGd~~VGKTsli~r~~~~~f--~~~y~~Tig~d~~~k~~~v~~~~~~l~iwDtaG----------qe~f~~l~-~~ 68 (170) T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF--DKNYKATIGVDFEMERFEILGVPFSLQLWDTAG----------QERFKCIA-ST 68 (170) T ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCCH-HH T ss_conf 899999899898999999963988--997256345058999999999999999998999----------97466443-77 Q ss_pred EEECCEEEEEECCCCCCCH--HHHHHHHHHHHCC---CCCCCEEEECCCCCCCHHHHH-HHHHHHCCCCCCCCCCCCCCC Q ss_conf 1201205998455321220--2122320000003---576655894422335415556-665420133320048831112 Q gi|255764471|r 282 SVRTCETTIVLLDATIPFE--KQDLRIVDSVFNT---GHAVVLALNKWDMVSDKLNLL-QDLRTKAIKNLPQIGDIYINT 355 (470) Q Consensus 282 ~i~~advvi~viDa~~~~~--~qd~~i~~~i~~~---~k~~iiv~NK~Dli~~~~~~~-~~~~~~~~~~~~~~~~~~i~~ 355 (470) T Consensus 69 y~r~a~~~ilvyDvt~~~Sf~~~~~w~~~~~~~~~~~~~~i~LvgNK~DL~~~~~~~~~~~~~~~----~a~~~~~~~~E 144 (170) T cd04108 69 YYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIK----LAAEMQAEYWS 144 (170) T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEHHHHHH----HHHHCCCEEEE T ss_conf 73278758999978987899999999999998508999829999984137987557644899999----99877987999 Q ss_pred CCCCCCCCHHHHHHHHHHHHH Q ss_conf 345333485899999999999 Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEINK 376 (470) Q Consensus 356 iSA~~g~gi~~l~~~i~~~~~ 376 (470) T Consensus 145 ~SAk~g~nV~e~F~~ia~~~~ 165 (170) T cd04108 145 VSALSGENVREFFFRVAALTF 165 (170) T ss_pred ECCCCCCCHHHHHHHHHHHHH T ss_conf 855788187999999999998

HHsearch alignment for GI: 255764471 and conserved domain: cd04108