HHsearch alignment for GI: 255764471 and conserved domain: cd04119
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.60 E-value=3e-15 Score=121.67 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=82.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
T Consensus 1 lKivvvG~~~vGKTSLi~r~~~~~f~-~~y~pTig~~~~~k~~~~~~~~~~l~iwDt~G~----------~~~~~~~-~~ 68 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFV-SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH----------PEYLEVR-NE 68 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC-CCCCCCCCEEEEEEEEEECCEEEEEEEEECCCC----------HHHHHHH-HH
T ss_conf 98999995995689999999639999-985897655777999999999999999989997----------6478999-99
Q ss_pred EEECCEEEEEECCCCCCCHHHH--HHHHHH---HH----CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 1201205998455321220212--232000---00----03576655894422335415556665420133320048831
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQD--LRIVDS---VF----NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd--~~i~~~---i~----~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (470)
T Consensus 69 ~~~~ad~~ilvydit~~~Sf~~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~-----~~~a~~~~~~ 143 (168)
T cd04119 69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEG-----RLWAESKGFK 143 (168)
T ss_pred HHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCHHHH-----HHHHHHCCCE
T ss_conf 98747788999508974448999999999999824534566862999854034442578899999-----9999986998
Q ss_pred CCCCCCCCCCCHHHHHHHHHH
Q ss_conf 112345333485899999999
Q gi|255764471|r 353 INTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 353 i~~iSA~~g~gi~~l~~~i~~ 373 (470)
T Consensus 144 ~~E~Sak~g~~V~e~F~~l~~ 164 (168)
T cd04119 144 YFETSACTGEGVNEMFQTLFS 164 (168)
T ss_pred EEEECCCCCCCHHHHHHHHHH
T ss_conf 999885779088999999999