HHsearch alignment for GI: 255764471 and conserved domain: cd04122
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.64 E-value=9.1e-16 Score=125.18 Aligned_cols=152 Identities=17% Similarity=0.202 Sum_probs=95.9
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH-HHCCCCEEEECCE--EEEEEECHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 303886403564256788765201211000245665-4202311420340--6999817110444443000111000121
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT-RDSVSISWNWKNH--PIEIFDTAGMRKPSRITESLEQKTVKKS 279 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtT-rD~i~~~~~~~~~--~~~liDTaGirkk~~~~~~~E~~s~~~t 279 (470)
T Consensus 2 ~~KivlvGd~~VGKTsli~r~~~~~--f~~~~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG----------~e~~~~~~- 68 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKK--FMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG----------QERFRAVT- 68 (166)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCCC-
T ss_conf 4999999999957999999991298--8999999744688999999999999999998999----------85444252-
Q ss_pred CEEEECCEEEEEECCCCCCCH--HHHHHHHHHHH---CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 001201205998455321220--21223200000---0357665589442233541555666542013332004883111
Q gi|255764471|r 280 MQSVRTCETTIVLLDATIPFE--KQDLRIVDSVF---NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~~~~--~qd~~i~~~i~---~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~ 354 (470)
T Consensus 69 ~~~~~~a~~~ilvydvt~~~Sf~~l~~w~-~~~~~~~~~~~~iilVGNK~DL~~~r~V~~~e~~~~a~-----~~~~~~~ 142 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWL-TDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFAD-----ENGLLFL 142 (166)
T ss_pred HHHEECCCEEEEEECCCCHHHHHHHHHHH-HHHHHHCCCCCEEEECCCCCCHHHCCCCCHHHHHHHHH-----HCCCEEE
T ss_conf 11143154659972587476799999999-99998569997587034015744438999999999999-----8699899
Q ss_pred CCCCCCCCCHHHHHHHHHH
Q ss_conf 2345333485899999999
Q gi|255764471|r 355 TISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 355 ~iSA~~g~gi~~l~~~i~~ 373 (470)
T Consensus 143 E~SAk~g~nV~e~F~~l~~ 161 (166)
T cd04122 143 ECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCCCCCHHHHHHHHHH
T ss_conf 9865878088999999999