HHsearch alignment for GI: 255764471 and conserved domain: cd04127

>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.62  E-value=1.5e-15  Score=123.71  Aligned_cols=156  Identities=15%  Similarity=0.177  Sum_probs=92.6

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEC----------C--EEEEEEECHHCCCCCCCCC
Q ss_conf             430388640356425678876520121100024566542023114203----------4--0699981711044444300
Q gi|255764471|r  202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK----------N--HPIEIFDTAGMRKPSRITE  269 (470)
Q Consensus       202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~----------~--~~~~liDTaGirkk~~~~~  269 (470)
T Consensus         3 ~~~KivvvGd~~VGKTsli~r~~~~~-f~~~y~~Tig~~~~~k~i~~~~~~~~~~~~~~~~v~l~iwDtaG---------   72 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNK-FNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAG---------   72 (180)
T ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCC---------
T ss_conf             78899999999988899999996195-89986884322688999998476554445788589999998988---------


Q ss_pred             HHHHHHCCCCCEEEECCEEEEEECCCCCC--CHHHHHHHHHHHHC----CCCCCCEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             01110001210012012059984553212--20212232000000----3576655894422335415556665420133
Q gi|255764471|r  270 SLEQKTVKKSMQSVRTCETTIVLLDATIP--FEKQDLRIVDSVFN----TGHAVVLALNKWDMVSDKLNLLQDLRTKAIK  343 (470)
Q Consensus       270 ~~E~~s~~~t~~~i~~advvi~viDa~~~--~~~qd~~i~~~i~~----~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~  343 (470)
T Consensus        73 -qe~~~~l~-~~~~~~a~~~ilvydit~~~Sf~~l~~w~-~~i~~~~~~~~~~iilVGNK~DL~~~r~V~~~e~~~-~a~  148 (180)
T cd04127          73 -QERFRSLT-TAFFRDAMGFLLIFDLTNEQSFLNVRNWM-SQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKA-LAD  148 (180)
T ss_pred             -CHHHHHHH-HHHHHHHCEEEEEEECCCHHHHHHHHHHH-HHHHHHCCCCCCCEEEECCCCCHHHCCCCCHHHHHH-HHH
T ss_conf             -63047888-99987543658999689889999899999-999985466898578750323667508889999999-999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             32004883111234533348589999999999
Q gi|255764471|r  344 NLPQIGDIYINTISGRTGEGLDDLMVSVLEIN  375 (470)
Q Consensus       344 ~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~  375 (470)
T Consensus       149 ~----~~~~~~E~SAk~g~nV~e~F~~l~~~i  176 (180)
T cd04127         149 K----YGIPYFETSAATGTNVEKAVERLLDLV  176 (180)
T ss_pred             H----CCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             8----499799980377919899999999999