HHsearch alignment for GI: 255764471 and conserved domain: cd04132
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.67 E-value=3e-16 Score=128.48 Aligned_cols=157 Identities=17% Similarity=0.188 Sum_probs=94.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEE-CCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 38864035642567887652012110002456654202311420-3406--99981711044444300011100012100
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW-KNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~-~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~F~--~~~~pTi~~~~~~~~~~~~~~~v~l~iwDtaG----------~e~~~~l~~~- 68 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAG----------QEEYDRLRPL- 68 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCCHHH-
T ss_conf 8999994997699999999639899--97589664799999995499899999996999----------7110534344-
Q ss_pred EEECCEEEEEECCCCCCCHHHHH--HHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC-CCCCCCCCC
Q ss_conf 12012059984553212202122--32000000--35766558944223354155566654201333200-488311123
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL--RIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTI 356 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~--~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i 356 (470)
T Consensus 69 ~~~~a~~~ilvydit~~~Sf~~i~~~W~~~i~~~~~~~piilVgnK~DL~~~~~~~-~~v~~e~~~~~a~~~~~~~y~Et 147 (187)
T cd04132 69 SYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLD-RKVTPAQAESVAKKQGAFAYLEC 147 (187)
T ss_pred HHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCC-CCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 53003488895036876779999999999999868999979999872212212237-65789999999998599789995
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 4533348589999999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~~~ 375 (470)
T Consensus 148 SAk~g~nV~e~F~~l~~~i 166 (187)
T cd04132 148 SAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 7688929899999999999