HHsearch alignment for GI: 255764471 and conserved domain: cd04133
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.60 E-value=2.8e-15 Score=121.88 Aligned_cols=158 Identities=16% Similarity=0.170 Sum_probs=95.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
T Consensus 2 iKivllGd~~VGKTsL~~rf~~~~-F~-~~~~pTi~~~~~~~i~v~~~~~~l~iwDTaG----------~e~~~~l~~-~ 68 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-FP-TDYIPTVFDNFSANVSVDGNTVNLGLWDTAG----------QEDYNRLRP-L 68 (176)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC-CC-CCCCCCEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCHHHH-H
T ss_conf 799998999977999999996598-99-9867853589999999999899999997999----------765424689-8
Q ss_pred EEECCEEEEEECCCCCCCHHH---HHHHHHHHH--CCCCCCCEEEECCCCCCCHHHHHH-----HHHHHCCCCCCCCCCC
Q ss_conf 120120599845532122021---223200000--035766558944223354155566-----6542013332004883
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQ---DLRIVDSVF--NTGHAVVLALNKWDMVSDKLNLLQ-----DLRTKAIKNLPQIGDI 351 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~q---d~~i~~~i~--~~~k~~iiv~NK~Dli~~~~~~~~-----~~~~~~~~~~~~~~~~ 351 (470)
T Consensus 69 ~y~~a~~~ilvydi~~~~Sf~~~~~~w~-~~~~~~~~~~piilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~~a~~~~~ 147 (176)
T cd04133 69 SYRGADVFVLAFSLISRASYENVLKKWV-PELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA 147 (176)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHH-HHHHHHCCCCCEEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHCCC
T ss_conf 7267875799997898789999999999-999986849988999986320212223333024677779999999997799
Q ss_pred -CCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf -111234533348589999999999
Q gi|255764471|r 352 -YINTISGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 352 -~i~~iSA~~g~gi~~l~~~i~~~~ 375 (470)
T Consensus 148 ~~y~EtSAk~~~nV~e~F~~~~~~i 172 (176)
T cd04133 148 AAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 7899947898809899999999998