HHsearch alignment for GI: 255764471 and conserved domain: cd04133

>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.60  E-value=2.8e-15  Score=121.88  Aligned_cols=158  Identities=16%  Similarity=0.170  Sum_probs=95.6

Q ss_pred             EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf             0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r  204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ  281 (470)
Q Consensus       204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~  281 (470)
T Consensus         2 iKivllGd~~VGKTsL~~rf~~~~-F~-~~~~pTi~~~~~~~i~v~~~~~~l~iwDTaG----------~e~~~~l~~-~   68 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNK-FP-TDYIPTVFDNFSANVSVDGNTVNLGLWDTAG----------QEDYNRLRP-L   68 (176)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCC-CC-CCCCCCEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCHHHH-H
T ss_conf             799998999977999999996598-99-9867853589999999999899999997999----------765424689-8


Q ss_pred             EEECCEEEEEECCCCCCCHHH---HHHHHHHHH--CCCCCCCEEEECCCCCCCHHHHHH-----HHHHHCCCCCCCCCCC
Q ss_conf             120120599845532122021---223200000--035766558944223354155566-----6542013332004883
Q gi|255764471|r  282 SVRTCETTIVLLDATIPFEKQ---DLRIVDSVF--NTGHAVVLALNKWDMVSDKLNLLQ-----DLRTKAIKNLPQIGDI  351 (470)
Q Consensus       282 ~i~~advvi~viDa~~~~~~q---d~~i~~~i~--~~~k~~iiv~NK~Dli~~~~~~~~-----~~~~~~~~~~~~~~~~  351 (470)
T Consensus        69 ~y~~a~~~ilvydi~~~~Sf~~~~~~w~-~~~~~~~~~~piilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~~a~~~~~  147 (176)
T cd04133          69 SYRGADVFVLAFSLISRASYENVLKKWV-PELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA  147 (176)
T ss_pred             HHCCCCEEEEEEECCCHHHHHHHHHHHH-HHHHHHCCCCCEEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHCCC
T ss_conf             7267875799997898789999999999-999986849988999986320212223333024677779999999997799


Q ss_pred             -CCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             -111234533348589999999999
Q gi|255764471|r  352 -YINTISGRTGEGLDDLMVSVLEIN  375 (470)
Q Consensus       352 -~i~~iSA~~g~gi~~l~~~i~~~~  375 (470)
T Consensus       148 ~~y~EtSAk~~~nV~e~F~~~~~~i  172 (176)
T cd04133         148 AAYIECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             7899947898809899999999998