HHsearch alignment for GI: 255764471 and conserved domain: cd04134

>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.63  E-value=2.5e-15  Score=122.23  Aligned_cols=155  Identities=16%  Similarity=0.230  Sum_probs=97.7

Q ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHH-HCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf             38864035642567887652012110002456654-2023114203406--99981711044444300011100012100
Q gi|255764471|r  205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR-DSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ  281 (470)
Q Consensus       205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTr-D~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~  281 (470)
T Consensus         2 KivlvGd~~VGKTsli~r~~~~~F--~~~y-~~Ti~~~~~~~~~v~~~~v~l~iwDTaG----------qe~~~~i~~~-   67 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYF--PQVY-EPTVFENYVHDIFVDGLHIELSLWDTAG----------QEEFDRLRSL-   67 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC--CCCC-CCCEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCHHHHH-
T ss_conf             899999799769999999970999--9986-8837899999999999999999984778----------5000035567-


Q ss_pred             EEECCEEEEEECCCCCCCHHHHH--HHHHHHHCC--CCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC---------CCC
Q ss_conf             12012059984553212202122--320000003--57665589442233541555666542013332---------004
Q gi|255764471|r  282 SVRTCETTIVLLDATIPFEKQDL--RIVDSVFNT--GHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL---------PQI  348 (470)
Q Consensus       282 ~i~~advvi~viDa~~~~~~qd~--~i~~~i~~~--~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~---------~~~  348 (470)
T Consensus        68 ~y~~a~~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~~~piiLVgnK~DL~~~~~~~-~~~~~~~~~~is~~eg~~~Ak~~  146 (189)
T cd04134          68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNER-DDLQRYGKHTISYEEGLAVAKRI  146 (189)
T ss_pred             HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHH-HHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             64378645999978987899999999999999749799789999880046532356-77766304665899999999982


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             88311123453334858999999999
Q gi|255764471|r  349 GDIYINTISGRTGEGLDDLMVSVLEI  374 (470)
Q Consensus       349 ~~~~i~~iSA~~g~gi~~l~~~i~~~  374 (470)
T Consensus       147 ~~~~y~EtSAkt~~nV~e~F~~lar~  172 (189)
T cd04134         147 NALRYLECSAKLNRGVNEAFTEAARV  172 (189)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             99789996806794989999999999