HHsearch alignment for GI: 255764471 and conserved domain: cd04134
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.63 E-value=2.5e-15 Score=122.23 Aligned_cols=155 Identities=16% Similarity=0.230 Sum_probs=97.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHH-HCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 38864035642567887652012110002456654-2023114203406--99981711044444300011100012100
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR-DSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTr-D~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~F--~~~y-~~Ti~~~~~~~~~v~~~~v~l~iwDTaG----------qe~~~~i~~~- 67 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYF--PQVY-EPTVFENYVHDIFVDGLHIELSLWDTAG----------QEEFDRLRSL- 67 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCC-CCCEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCHHHHH-
T ss_conf 899999799769999999970999--9986-8837899999999999999999984778----------5000035567-
Q ss_pred EEECCEEEEEECCCCCCCHHHHH--HHHHHHHCC--CCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC---------CCC
Q ss_conf 12012059984553212202122--320000003--57665589442233541555666542013332---------004
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL--RIVDSVFNT--GHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL---------PQI 348 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~--~i~~~i~~~--~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~---------~~~ 348 (470)
T Consensus 68 ~y~~a~~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~~~piiLVgnK~DL~~~~~~~-~~~~~~~~~~is~~eg~~~Ak~~ 146 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNER-DDLQRYGKHTISYEEGLAVAKRI 146 (189)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHH-HHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 64378645999978987899999999999999749799789999880046532356-77766304665899999999982
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88311123453334858999999999
Q gi|255764471|r 349 GDIYINTISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 349 ~~~~i~~iSA~~g~gi~~l~~~i~~~ 374 (470)
T Consensus 147 ~~~~y~EtSAkt~~nV~e~F~~lar~ 172 (189)
T cd04134 147 NALRYLECSAKLNRGVNEAFTEAARV 172 (189)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 99789996806794989999999999