HHsearch alignment for GI: 255764471 and conserved domain: cd04149
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.66 E-value=4.6e-16 Score=127.18 Aligned_cols=155 Identities=15% Similarity=0.178 Sum_probs=95.7
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 44303886403564256788765201211000245665420231142034069998171104444430001110001210
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
T Consensus 7 kk~~kililG~~~sGKTsil~~l~~~~~~~~~pTvg----~~~~~~~~~~~~l~iwD~~Gq----------e~~r~l-~~ 71 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG----FNVETVTYKNVKFNVWDVGGQ----------DKIRPL-WR 71 (168)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC----CEEEEEEECCEEEEEEECCCC----------CCCCCH-HH
T ss_conf 888899999999999899999996699876026267----007999989889999989999----------746606-57
Q ss_pred EEEECCEEEEEECCCCCCC--HHHHHHH---HHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 0120120599845532122--0212232---0000003576655894422335415556665420133320048831112
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPF--EKQDLRI---VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~--~~qd~~i---~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
T Consensus 72 ~y~~~~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~pilI~~NK~Dl~~~~~--~~ei~~~l~l~~~~~~~~~i~~ 149 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWYVQP 149 (168)
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCCCCC--HHHHHHHHCHHHHHCCCCEEEE
T ss_conf 64378866899983776789999999999997145227986999997566777889--9999999787655179809998
Q ss_pred CCCCCCCCHHHHHHHHH
Q ss_conf 34533348589999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVL 372 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~ 372 (470)
T Consensus 150 ~SA~tG~Gv~e~f~WL~ 166 (168)
T cd04149 150 SCATSGDGLYEGLTWLS 166 (168)
T ss_pred EECCCCCCHHHHHHHHH
T ss_conf 06878969799999986