HHsearch alignment for GI: 255764471 and conserved domain: cd04149

>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.66  E-value=4.6e-16  Score=127.18  Aligned_cols=155  Identities=15%  Similarity=0.178  Sum_probs=95.7

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf             44303886403564256788765201211000245665420231142034069998171104444430001110001210
Q gi|255764471|r  201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM  280 (470)
Q Consensus       201 ~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~  280 (470)
T Consensus         7 kk~~kililG~~~sGKTsil~~l~~~~~~~~~pTvg----~~~~~~~~~~~~l~iwD~~Gq----------e~~r~l-~~   71 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG----FNVETVTYKNVKFNVWDVGGQ----------DKIRPL-WR   71 (168)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC----CEEEEEEECCEEEEEEECCCC----------CCCCCH-HH
T ss_conf             888899999999999899999996699876026267----007999989889999989999----------746606-57


Q ss_pred             EEEECCEEEEEECCCCCCC--HHHHHHH---HHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             0120120599845532122--0212232---0000003576655894422335415556665420133320048831112
Q gi|255764471|r  281 QSVRTCETTIVLLDATIPF--EKQDLRI---VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT  355 (470)
Q Consensus       281 ~~i~~advvi~viDa~~~~--~~qd~~i---~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~  355 (470)
T Consensus        72 ~y~~~~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~pilI~~NK~Dl~~~~~--~~ei~~~l~l~~~~~~~~~i~~  149 (168)
T cd04149          72 HYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWYVQP  149 (168)
T ss_pred             HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCCCCC--HHHHHHHHCHHHHHCCCCEEEE
T ss_conf             64378866899983776789999999999997145227986999997566777889--9999999787655179809998


Q ss_pred             CCCCCCCCHHHHHHHHH
Q ss_conf             34533348589999999
Q gi|255764471|r  356 ISGRTGEGLDDLMVSVL  372 (470)
Q Consensus       356 iSA~~g~gi~~l~~~i~  372 (470)
T Consensus       150 ~SA~tG~Gv~e~f~WL~  166 (168)
T cd04149         150 SCATSGDGLYEGLTWLS  166 (168)
T ss_pred             EECCCCCCHHHHHHHHH
T ss_conf             06878969799999986