HHsearch alignment for GI: 255764471 and conserved domain: cd04150
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.63 E-value=3e-15 Score=121.74 Aligned_cols=145 Identities=17% Similarity=0.199 Sum_probs=95.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 89997189887888999985885010258985302238999998998999996588420763689999999999999877
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEA 83 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~a 83 (470)
T Consensus 2 KililG~~~sGKTsll~~l~~~~~~~~~pT~g----~~~~~~~~~~~~l~iwD~~G~~~-----~----r~l~~~Y~~~a 68 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG----FNVETVEYKNISFTVWDVGGQDK-----I----RPLWRHYFQNT 68 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC----CCEEEEEECCEEEEEEECCCCCC-----C----CHHHHHHCCCC
T ss_conf 99999999999899999997299677589687----01799998989999997899721-----4----65678647687
Q ss_pred CEEEEEECCCCCCCH--HHHHHHHHHH---CCCCCCCCCHHHHCCCHHH--HHHHHHHHHC-C--C--CCEEEHHHCCCC
Q ss_conf 989999759887762--3445553321---0233222205652230121--0012455312-2--2--201001110222
Q gi|255764471|r 84 HLILFLIDSKAGITP--YDHAITSFLR---KKNIPIIIVSNKMDTRIAQ--RNFYEIYSLD-F--K--EIVEISAEHDLG 151 (470)
Q Consensus 84 D~il~vvD~~~g~~~--~D~~i~~~lr---~~~~~~ilv~NK~D~~~~~--~~~~e~~~lg-~--~--~~i~iSA~~g~G 151 (470)
T Consensus 69 ~~iI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~G 148 (159)
T cd04150 69 QGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDG 148 (159)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHHCCCEEEEEEECCCCCC
T ss_conf 38999997777789999999999996235336982999997566778989999999968666637985999826867939
Q ss_pred CHHHHHHHHH
Q ss_conf 0147999999
Q gi|255764471|r 152 TSELHSVIFK 161 (470)
Q Consensus 152 i~~L~~~i~~ 161 (470)
T Consensus 149 v~e~f~WL~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHC
T ss_conf 8999999855