HHsearch alignment for GI: 255764471 and conserved domain: cd04153
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.67 E-value=4.2e-16 Score=127.48 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=99.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899999658842076368999999999999987
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
T Consensus 16 ~KililG~~~sGKTsil~~l~~~~~~~~~pT~G~~----~~~i~~~~~~~~iwD~~G~e~~-----~~----~~~~y~~~ 82 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN----VEEIVYKNIRFLMWDIGGQESL-----RS----SWNTYYTN 82 (174)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC----EEEEEECCEEEEEEECCCCCCC-----CC----HHHHHHCC
T ss_conf 99999989999889999999739927716723604----6999978889999989998656-----62----26777057
Q ss_pred CCEEEEEECCCCCCC--HHHHHHHHHHHC---CCCCCCCCHHHHCCCHHH--HHHHHHHHHC-C----CCCEEEHHHCCC
Q ss_conf 798999975988776--234455533210---233222205652230121--0012455312-2----220100111022
Q gi|255764471|r 83 AHLILFLIDSKAGIT--PYDHAITSFLRK---KNIPIIIVSNKMDTRIAQ--RNFYEIYSLD-F----KEIVEISAEHDL 150 (470)
Q Consensus 83 aD~il~vvD~~~g~~--~~D~~i~~~lr~---~~~~~ilv~NK~D~~~~~--~~~~e~~~lg-~----~~~i~iSA~~g~ 150 (470)
T Consensus 83 a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~~~~SAktG~ 162 (174)
T cd04153 83 TDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGE 162 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 75379999767888999999999999726101698289999555565578999999997477763598099996685891
Q ss_pred CCHHHHHHHHH
Q ss_conf 20147999999
Q gi|255764471|r 151 GTSELHSVIFK 161 (470)
Q Consensus 151 Gi~~L~~~i~~ 161 (470)
T Consensus 163 Gv~e~f~wLa~ 173 (174)
T cd04153 163 GLPEGLDWIAS 173 (174)
T ss_pred CHHHHHHHHHC
T ss_conf 98999999866