HHsearch alignment for GI: 255764471 and conserved domain: cd04153

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.67  E-value=4.2e-16  Score=127.48  Aligned_cols=146  Identities=18%  Similarity=0.230  Sum_probs=99.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             08999718988788899998588501025898530223899999899899999658842076368999999999999987
Q gi|255764471|r    3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE   82 (470)
Q Consensus         3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~   82 (470)
T Consensus        16 ~KililG~~~sGKTsil~~l~~~~~~~~~pT~G~~----~~~i~~~~~~~~iwD~~G~e~~-----~~----~~~~y~~~   82 (174)
T cd04153          16 YKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN----VEEIVYKNIRFLMWDIGGQESL-----RS----SWNTYYTN   82 (174)
T ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC----EEEEEECCEEEEEEECCCCCCC-----CC----HHHHHHCC
T ss_conf             99999989999889999999739927716723604----6999978889999989998656-----62----26777057


Q ss_pred             CCEEEEEECCCCCCC--HHHHHHHHHHHC---CCCCCCCCHHHHCCCHHH--HHHHHHHHHC-C----CCCEEEHHHCCC
Q ss_conf             798999975988776--234455533210---233222205652230121--0012455312-2----220100111022
Q gi|255764471|r   83 AHLILFLIDSKAGIT--PYDHAITSFLRK---KNIPIIIVSNKMDTRIAQ--RNFYEIYSLD-F----KEIVEISAEHDL  150 (470)
Q Consensus        83 aD~il~vvD~~~g~~--~~D~~i~~~lr~---~~~~~ilv~NK~D~~~~~--~~~~e~~~lg-~----~~~i~iSA~~g~  150 (470)
T Consensus        83 a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~~~~SAktG~  162 (174)
T cd04153          83 TDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGE  162 (174)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             75379999767888999999999999726101698289999555565578999999997477763598099996685891


Q ss_pred             CCHHHHHHHHH
Q ss_conf             20147999999
Q gi|255764471|r  151 GTSELHSVIFK  161 (470)
Q Consensus       151 Gi~~L~~~i~~  161 (470)
T Consensus       163 Gv~e~f~wLa~  173 (174)
T cd04153         163 GLPEGLDWIAS  173 (174)
T ss_pred             CHHHHHHHHHC
T ss_conf             98999999866