HHsearch alignment for GI: 255764471 and conserved domain: cd04160
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.70 E-value=1.7e-16 Score=130.17 Aligned_cols=149 Identities=21% Similarity=0.280 Sum_probs=98.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCE---EEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 899971898878889999858850---10258985302238999998998999996588420763689999999999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKM---AVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~---aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
T Consensus 1 ~ivilG~~~~GKTsll~~l~~~~~~~~~~~~~~~~~Tvg~~~~~i~~~~~~l~iwD~~Gqe---------~~~~l~~~y~ 71 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE---------SLRSLWDKYY 71 (167)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCH---------HHHHHHHHHC
T ss_conf 9999999998888999988750367677765540353132689999899999999689878---------8878998742
Q ss_pred HHCCEEEEEECCCCCCCH--HHHHHHHHHH---CCCCCCCCCHHHHCCCHHH--HHHHHHHH-----HCCC--CCEEEHH
Q ss_conf 877989999759887762--3445553321---0233222205652230121--00124553-----1222--2010011
Q gi|255764471|r 81 NEAHLILFLIDSKAGITP--YDHAITSFLR---KKNIPIIIVSNKMDTRIAQ--RNFYEIYS-----LDFK--EIVEISA 146 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~--~D~~i~~~lr---~~~~~~ilv~NK~D~~~~~--~~~~e~~~-----lg~~--~~i~iSA 146 (470)
T Consensus 72 ~~a~~ii~VvD~sd~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~SA 151 (167)
T cd04160 72 AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSA 151 (167)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 89878999986686788999999999975110248962999970667665778999999999999985469989999887
Q ss_pred HCCCCCHHHHHHHHH
Q ss_conf 102220147999999
Q gi|255764471|r 147 EHDLGTSELHSVIFK 161 (470)
Q Consensus 147 ~~g~Gi~~L~~~i~~ 161 (470)
T Consensus 152 ktG~Gv~e~f~wL~~ 166 (167)
T cd04160 152 LEGTGVREGIEWLVE 166 (167)
T ss_pred CCCCCHHHHHHHHHC
T ss_conf 829498999999965