HHsearch alignment for GI: 255764471 and conserved domain: cd04161
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.41 E-value=8.2e-13 Score=105.29 Aligned_cols=148 Identities=18% Similarity=0.170 Sum_probs=94.7
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCE-EEE
Q ss_conf 8864035642567887652012110002456654202311420340699981711044444300011100012100-120
Q gi|255764471|r 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ-SVR 284 (470)
Q Consensus 206 ~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~-~i~ 284 (470)
T Consensus 2 ililGLd~aGKTTil~~l~~~~~~~~~PT~G~~----~~~~~~~~~~l~~~DlgG~~----------~~--R~lW~~Y~~ 65 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGGA----------NF--RGIWVNYYA 65 (167)
T ss_pred EEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCC----EEEEEECCEEEEEEECCCCH----------HH--HHHHHHHCC
T ss_conf 899900899889999998289987650877731----79999899999999899877----------88--899998734
Q ss_pred CCEEEEEECCCCCC--CHHHHH---HHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCC-CCC--CCCCCCCCCC
Q ss_conf 12059984553212--202122---320000003576655894422335415556665420133-320--0488311123
Q gi|255764471|r 285 TCETTIVLLDATIP--FEKQDL---RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK-NLP--QIGDIYINTI 356 (470)
Q Consensus 285 ~advvi~viDa~~~--~~~qd~---~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~-~~~--~~~~~~i~~i 356 (470)
T Consensus 66 ~~~gIIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~~a~~--~~ei~~~L~L~~l~~~~~~~~~I~~c 143 (167)
T cd04161 66 EAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPC 143 (167)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCC--HHHHHHHHCCHHHCCCCCCEEEEEEC
T ss_conf 7765799985575889999999999996588778995999988657615899--99999881974240899863799957
Q ss_pred CCCCCCC------HHHHHHHH
Q ss_conf 4533348------58999999
Q gi|255764471|r 357 SGRTGEG------LDDLMVSV 371 (470)
Q Consensus 357 SA~~g~g------i~~l~~~i 371 (470)
T Consensus 144 sA~tG~G~~~~~~l~eGl~WL 164 (167)
T cd04161 144 SAIEGLGKKIDPSIVEGLRWL 164 (167)
T ss_pred EEECCCCCCCCCCHHHHHHHH
T ss_conf 644488878766315499898