HHsearch alignment for GI: 255764471 and conserved domain: cd04162
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.42 E-value=1.9e-12 Score=102.79 Aligned_cols=153 Identities=15% Similarity=0.204 Sum_probs=96.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCC--CHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCE-
Q ss_conf 38864035642567887652012110--002456654202311420340699981711044444300011100012100-
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLL--TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ- 281 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~i--vs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~- 281 (470)
T Consensus 1 kIlilGLd~aGKTTil~~l~~~~-~~~~~~PT~Gf~----~~~i~~~~~~l~~wDlgGq----------~~~R--~~W~~ 63 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSER-SLESVVPTTGFN----SVAIPTQDAIMELLEIGGS----------QNLR--KYWKR 63 (164)
T ss_pred CEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCC----EEEEEECCEEEEEEECCCH----------HHHH--HHHHH
T ss_conf 99999679998999999981699-876535632774----6999989999999853752----------8886--56998
Q ss_pred EEECCEEEEEECCCCCCC--HHHHHHHHHHH-HCCCCCCCEEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCC
Q ss_conf 120120599845532122--02122320000-00357665589442233541555666542013-332004883111234
Q gi|255764471|r 282 SVRTCETTIVLLDATIPF--EKQDLRIVDSV-FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI-KNLPQIGDIYINTIS 357 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~--~~qd~~i~~~i-~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~-~~~~~~~~~~i~~iS 357 (470)
T Consensus 64 Y~~~~~gIIfVVDssD~~rl~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~s--~~ei~~~L~L~~i~~~r~w~i-q~~ 140 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARS--VQEIHKELELEPIARGRRWIL-QGT 140 (164)
T ss_pred HHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC--HHHHHHHCCCCCCCCCCCEEE-EEE
T ss_conf 71177589999956888899999999999970879986999986324336999--999998669946379998899-711
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q ss_conf 53334858999999999998
Q gi|255764471|r 358 GRTGEGLDDLMVSVLEINKL 377 (470)
Q Consensus 358 A~~g~gi~~l~~~i~~~~~~ 377 (470)
T Consensus 141 s~~g~gl~~~~~~l~~~~~~ 160 (164)
T cd04162 141 SLDDDGSPSRMEAVKDLLSQ 160 (164)
T ss_pred CCCCCCCHHHHHHHHHHHHH
T ss_conf 04799858999999999999