HHsearch alignment for GI: 255764471 and conserved domain: cd04164
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=100.00 E-value=1.8e-36 Score=264.75 Aligned_cols=156 Identities=31% Similarity=0.579 Sum_probs=135.9
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf 30388640356425678876520121100024566542023114203406999817110444443000111000121001
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~ 282 (470)
T Consensus 1 ~~~ValvG~pN~GKStL~N~l~g~~~~ivs~~pgtTrd~~~~~~~~~~~~i~l~DTpG~~~~---~~~~e~~~~~~~~~~ 77 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRET---EDEIEKIGIERAREA 77 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEECCEEEEEECCEEEEEEECCCCCCC---CCHHHHHHHHHHHHH
T ss_conf 97999988999989999999968973343288984786326789539988999726775444---578999999999863
Q ss_pred EECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20120599845532122021223200000035766558944223354155566654201333200488311123453334
Q gi|255764471|r 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 (470)
Q Consensus 283 i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~ 362 (470)
T Consensus 78 i~~aDlil~vvD~~~~~~~~~~~~~~~~--~~~p~i~v~NKiDl~~~~~~~------------~~~~~~~vi~ISA~~g~ 143 (157)
T cd04164 78 IEEADLVLFVIDASRGLDEEDLEILELP--ADKPIIVVLNKSDLLPDSELL------------SLLAGKPIIAISAKTGE 143 (157)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHH--CCCCEEEEEECCCCCCCHHHH------------HHCCCCCEEEEECCCCC
T ss_conf 0157679999889877888899999851--479989999676014866679------------85289977999852795
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 8589999999999
Q gi|255764471|r 363 GLDDLMVSVLEIN 375 (470)
Q Consensus 363 gi~~l~~~i~~~~ 375 (470)
T Consensus 144 Gi~~L~~~I~e~a 156 (157)
T cd04164 144 GLDELKEALLELA 156 (157)
T ss_pred CHHHHHHHHHHHC
T ss_conf 9999999999972