HHsearch alignment for GI: 255764471 and conserved domain: cd04172
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.52 E-value=6.7e-14 Score=112.63 Aligned_cols=158 Identities=17% Similarity=0.206 Sum_probs=98.9
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 30388640356425678876520121100024566542023114203406--9998171104444430001110001210
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
T Consensus 5 k~KivlvGd~~VGKTsLi~r~~~~~F--~~~y~pTi~~~~~~~~~i~~~~v~l~iwDTaG----------qe~f~~l~~~ 72 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSG----------SPYYDNVRPL 72 (182)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCEEEEEEEEEEEECCEEEEEEEEECCC----------CHHCCCCCHH
T ss_conf 48999999999899999999983999--99868735322689999999999999996898----------6201221255
Q ss_pred EEEECCEEEEEECCCCCCC--HHH-HHHHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHH--------HCCCCC-C
Q ss_conf 0120120599845532122--021-2232000000--357665589442233541555666542--------013332-0
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPF--EKQ-DLRIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRT--------KAIKNL-P 346 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~--~~q-d~~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~~~~--------~~~~~~-~ 346 (470)
T Consensus 73 -~y~~~~~~ilvydit~~~Sf~~v~~~W~-~ei~~~~~~~~iiLVGnK~DLr~~~~~~-~~l~~~~~~~Vs~eeg~~~A~ 149 (182)
T cd04172 73 -SYPDSDAVLICFDISRPETLDSVLKKWK-GEIQEFCPNTKMLLVGCKSDLRTDLTTL-VELSNHRQTPVSYDQGANMAK 149 (182)
T ss_pred -HHCCCCEEEEEEECCCHHHHHHHHHHHH-HHHHHHCCCCCEEEEEECCCCCCCHHHH-HHHHHCCCCCCCHHHHHHHHH
T ss_conf -5127878999964897788999999999-9999868799889996171012441456-677645677869999999999
Q ss_pred CCCCCCCCCCCCCCCCC-HHHHHHHHHHHH
Q ss_conf 04883111234533348-589999999999
Q gi|255764471|r 347 QIGDIYINTISGRTGEG-LDDLMVSVLEIN 375 (470)
Q Consensus 347 ~~~~~~i~~iSA~~g~g-i~~l~~~i~~~~ 375 (470)
T Consensus 150 ~~g~~~y~EtSAk~~~n~V~e~F~~a~~a~ 179 (182)
T cd04172 150 QIGAATYIECSALQSENSVRDIFHVATLAC 179 (182)
T ss_pred HCCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 769979999170789959899999999998