HHsearch alignment for GI: 255764471 and conserved domain: cd04175
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.64 E-value=8.5e-16 Score=125.39 Aligned_cols=152 Identities=17% Similarity=0.222 Sum_probs=96.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEE--EEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 03886403564256788765201211000245665420231142034069--9981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPI--EIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~--~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
T Consensus 2 fKIvllGd~~VGKTsli~r~~~~~-f-~~~y~pTi~~~~~k~i~~~~~~~~l~iwDtaG----------~e~~~~l~~-~ 68 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI-F-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG----------TEQFTAMRD-L 68 (164)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC-C-CCCCCCCEEEEEEEEEEECCEEEEEEECCCCC----------CHHHHHHHH-H
T ss_conf 299998999975999999997092-8-86568840468999999999999998514775----------432456788-8
Q ss_pred EEECCEEEEEECCCCCCCHHHHH-HHHHHHH----CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 12012059984553212202122-3200000----035766558944223354155566654201333200488311123
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL-RIVDSVF----NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~-~i~~~i~----~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
T Consensus 69 y~~~a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~V~~~~~~~-~a~~----~~~~~~E~ 143 (164)
T cd04175 69 YMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN-LARQ----WGCAFLET 143 (164)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCCCCCHHHHHH-HHHH----CCCEEEEE
T ss_conf 735786899996078777899999999999986289996399852145722206899999999-9998----59999996
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 45333485899999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~ 373 (470)
T Consensus 144 SAk~~~nV~~~F~~l~~ 160 (164)
T cd04175 144 SAKAKINVNEIFYDLVR 160 (164)
T ss_pred CCCCCCCHHHHHHHHHH
T ss_conf 68988178999999999