HHsearch alignment for GI: 255764471 and conserved domain: cd04175

>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.64  E-value=8.5e-16  Score=125.39  Aligned_cols=152  Identities=17%  Similarity=0.222  Sum_probs=96.4

Q ss_pred             EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEE--EEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf             03886403564256788765201211000245665420231142034069--9981711044444300011100012100
Q gi|255764471|r  204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPI--EIFDTAGMRKPSRITESLEQKTVKKSMQ  281 (470)
Q Consensus       204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~--~liDTaGirkk~~~~~~~E~~s~~~t~~  281 (470)
T Consensus         2 fKIvllGd~~VGKTsli~r~~~~~-f-~~~y~pTi~~~~~k~i~~~~~~~~l~iwDtaG----------~e~~~~l~~-~   68 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGI-F-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG----------TEQFTAMRD-L   68 (164)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCC-C-CCCCCCCEEEEEEEEEEECCEEEEEEECCCCC----------CHHHHHHHH-H
T ss_conf             299998999975999999997092-8-86568840468999999999999998514775----------432456788-8


Q ss_pred             EEECCEEEEEECCCCCCCHHHHH-HHHHHHH----CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             12012059984553212202122-3200000----035766558944223354155566654201333200488311123
Q gi|255764471|r  282 SVRTCETTIVLLDATIPFEKQDL-RIVDSVF----NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI  356 (470)
Q Consensus       282 ~i~~advvi~viDa~~~~~~qd~-~i~~~i~----~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  356 (470)
T Consensus        69 y~~~a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~V~~~~~~~-~a~~----~~~~~~E~  143 (164)
T cd04175          69 YMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN-LARQ----WGCAFLET  143 (164)
T ss_pred             HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCCCCCHHHHHH-HHHH----CCCEEEEE
T ss_conf             735786899996078777899999999999986289996399852145722206899999999-9998----59999996


Q ss_pred             CCCCCCCHHHHHHHHHH
Q ss_conf             45333485899999999
Q gi|255764471|r  357 SGRTGEGLDDLMVSVLE  373 (470)
Q Consensus       357 SA~~g~gi~~l~~~i~~  373 (470)
T Consensus       144 SAk~~~nV~~~F~~l~~  160 (164)
T cd04175         144 SAKAKINVNEIFYDLVR  160 (164)
T ss_pred             CCCCCCCHHHHHHHHHH
T ss_conf             68988178999999999