HHsearch alignment for GI: 255764471 and conserved domain: pfam03308
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=99.18 E-value=2.2e-10 Score=88.96 Aligned_cols=175 Identities=21% Similarity=0.239 Sum_probs=97.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCC------CCCCC-----HHHHH---------------------------------
Q ss_conf 44303886403564256788765201------21100-----02456---------------------------------
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGY------NRLLT-----GSQSG--------------------------------- 236 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~------~r~iv-----s~~~G--------------------------------- 236 (470)
T Consensus 27 g~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sgGaiLGDr~RM~~~~~~~~vfiRs~~srg~lGGl 106 (267)
T pfam03308 27 GRAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILGDRTRMQRLAVDPGAFIRSSPSRGALGGL 106 (267)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCC
T ss_conf 99559987689988799999999999996898689999789998888630010777765058998588645778888871
Q ss_pred --HHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEE-EECCEEEEEECCCCCCCHHHHHHHHHHHHCC
Q ss_conf --6542023114203406999817110444443000111000121001-2012059984553212202122320000003
Q gi|255764471|r 237 --ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS-VRTCETTIVLLDATIPFEKQDLRIVDSVFNT 313 (470)
Q Consensus 237 --tTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~-i~~advvi~viDa~~~~~~qd~~i~~~i~~~ 313 (470)
T Consensus 107 s~~t~~~i~-lleaaGfD~IivETVGV---------------GQsE~~v~~~aD~~llv~~Pg~GDeiQ~iK--aGImE- 167 (267)
T pfam03308 107 SRATREAIL-LLDAAGFDVIIIETVGV---------------GQSEVDIANMADTFVLVTIPGGGDDLQGIK--AGLME- 167 (267)
T ss_pred CHHHHHHHH-HHHHCCCCEEEEECCCC---------------CCCCHHHHHHCCEEEEEECCCCCHHHHHHH--HHHHH-
T ss_conf 476999999-99977999999924777---------------753035554157689995588760888987--53765-
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-----CCHHH
Q ss_conf 5766558944223354155566654201333--2004883111234533348589999999999984146-----89789
Q gi|255764471|r 314 GHAVVLALNKWDMVSDKLNLLQDLRTKAIKN--LPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTR-----ITTSY 386 (470)
Q Consensus 314 ~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~--~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~r-----i~T~~ 386 (470)
T Consensus 168 -iaDi~vVNKaD~~~-A~~~~~~l~~~l~l~~~~~~~W~p~Vl~tSA~~g~Gi~el~~~I~~~~~~l~~sG~l~~rR~~q 245 (267)
T pfam03308 168 -IADIYVVNKADLPG-AERTARELRSALHLLTPKEAGWRPPVLTTSAVTGEGIDELWDAIEEHREFLTATGLLAARRRAR 245 (267)
T ss_pred -HCCEEEEECCCHHH-HHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf -35489996676476-9999999999985179877899999899874788999999999999999999788699999999
Q ss_pred HHHHHHHHHH
Q ss_conf 8999999998
Q gi|255764471|r 387 LNSWLQKTQL 396 (470)
Q Consensus 387 LN~~l~~~~~ 396 (470)
T Consensus 246 ~~~w~~~~I~ 255 (267)
T pfam03308 246 IEEWLKTLVE 255 (267)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999